View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5782_low_23 (Length: 321)

Name: NF5782_low_23
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5782_low_23
NF5782_low_23
[»] chr1 (1 HSPs)
chr1 (10-305)||(12256832-12257128)
[»] chr7 (4 HSPs)
chr7 (12-158)||(31228393-31228539)
chr7 (123-169)||(23862096-23862142)
chr7 (12-107)||(23861999-23862093)
chr7 (251-301)||(47270673-47270723)
[»] chr4 (4 HSPs)
chr4 (29-161)||(7256709-7256841)
chr4 (186-247)||(32150117-32150178)
chr4 (257-291)||(56269380-56269414)
chr4 (213-291)||(38543823-38543898)
[»] chr2 (4 HSPs)
chr2 (12-140)||(8533780-8533908)
chr2 (51-160)||(34639612-34639721)
chr2 (11-161)||(16442961-16443111)
chr2 (181-295)||(2805232-2805342)
[»] chr8 (1 HSPs)
chr8 (242-295)||(32957657-32957710)
[»] chr5 (1 HSPs)
chr5 (251-295)||(5355444-5355488)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 12257128 - 12256832
Alignment:
Q  10 taattctctcatgtgactagagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattg 109  Q
    |||||||||||||||| | |||| |||| ||||||||||| |||||||||||||||  |  ||  ||||||||||||||||||||||||||| |||||||    
T  12257128 taattctctcatgtgattggagaagccaatgagatctaaaccatttatttttcactatttcatacggagccctcactattgaagtaattgaaaggtattg 12257029  T
Q  110 atgttcattgcactctctccattgaaaatttcactggaggggatatgcacccgtaattactgagtcaaaattctctccatttattccatttgaagagagg 209  Q
    |||| || |||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12257028 atgtccagtgcactttctccattgaaaatttcaccggaggggatctgcacccgtaattactgagtcaaaattctctccatttattccatttgaagagagg 12256929  T
Q  210 aagacacaaagaaatataaaaataactaatattagtagtgtgactcacttagtggtaggacccgctacatactt-ttttgtatctatatcttatcat 305  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||    
T  12256928 aagacacaaagaaatttaaaaataattaatattagtagtgtgactcacttagtggtaggacccactacatactttttttatatttatatcttatcat 12256832  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 31228539 - 31228393
Alignment:
Q  12 attctctcatgtgactagagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattgat 111  Q
    |||||||| ||||| | ||||| ||||||||||||||  ||||||||||  ||| ||| ||||||||||||||   ||||||||||||||||||||||||    
T  31228539 attctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtattgat 31228440  T
Q  112 gttcattgcactctctccattgaaaatttcactggaggggatatgca 158  Q
    || ||  |||||||||||||||||||||||||| |||| ||| ||||    
T  31228439 gtccaccgcactctctccattgaaaatttcacttgaggagatctgca 31228393  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 23862096 - 23862142
Alignment:
Q  123 tctctccattgaaaatttcactggaggggatatgcacccgtaattac 169  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  23862096 tctctccattgaaaatttcactggaggggatttgcacccgtatttac 23862142  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 23861999 - 23862093
Alignment:
Q  12 attctctcatgtgactagagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtat 107  Q
    |||||||| |||||   ||||| ||| ||||||||||  ||||||||||  ||| ||| |||||| ||| ||| ||||||||||||||||||||||    
T  23861999 attctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatgtgg-gccttcaatattgaagtaattgaatggtat 23862093  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 47270673 - 47270723
Alignment:
Q  251 gactcacttagtggtaggacccgctacatacttttttgtatctatatctta 301  Q
    |||||||||||||||| || || |||| ||||||||||| |||||||||||    
T  47270673 gactcacttagtggtatgatccactacctacttttttgtttctatatctta 47270723  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 7256841 - 7256709
Alignment:
Q  29 gagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattgatgttcattgcactctctc 128  Q
    ||||| ||||||||||||||  |||||||||| |||| ||  ||| |  |||||||  ||||||||||||||||||||| ||||| || |||||||||||    
T  7256841 gagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtatagatgtccactgcactctctc 7256742  T
Q  129 cattgaaaatttcactggaggggatatgcaccc 161  Q
    |||||||||||||||| ||||||||||||||||    
T  7256741 cattgaaaatttcactagaggggatatgcaccc 7256709  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 32150178 - 32150117
Alignment:
Q  186 ccatttattccatttgaagagaggaagacacaaagaaatataaaaataactaatattagtag 247  Q
    |||||| |||||||||||||||  ||||||||||||| | ||||||||| ||||| ||||||    
T  32150178 ccatttcttccatttgaagagataaagacacaaagaactttaaaaataattaatagtagtag 32150117  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 56269414 - 56269380
Alignment:
Q  257 cttagtggtaggacccgctacatacttttttgtat 291  Q
    |||||||||||||||| ||||||||||||||||||    
T  56269414 cttagtggtaggacccactacatacttttttgtat 56269380  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 38543823 - 38543898
Alignment:
Q  213 acacaaagaaatataaaaataactaatattagtagtgtgactcacttagtggtaggacccgctacatacttttttgtat 291  Q
    ||||||| |||| ||||||||| ||||| ||||||    ||||| |||||||||||| ||| || ||||||||||||||    
T  38543823 acacaaataaatttaaaaataattaatagtagtaga---actcatttagtggtaggaaccggtatatacttttttgtat 38543898  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 8533780 - 8533908
Alignment:
Q  12 attctctcatgtgactagagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattgat 111  Q
    |||||||||||| ||| |||||  || ||||||||||  |||||||||| |||| |||  || |||||| |||  |||||||||||||||||||||| ||    
T  8533780 attctctcatgtaacttgagagttcaatgagatctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtattaat 8533879  T
Q  112 gttcattgcactctctccattgaaaattt 140  Q
    ||||| | |||||||||||||||||||||    
T  8533880 gttcactacactctctccattgaaaattt 8533908  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 34639612 - 34639721
Alignment:
Q  51 catttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattgatgttcattgcactctctccattgaaaatttcactggaggg 150  Q
    ||||||||||||||| ||| |||| | |||| ||  ||||| |||||||||||||||| ||| ||| | ||| |||||||||| ||||||||| ||||||    
T  34639612 catttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtattcatgatcactacacactctccattggaaatttcaccggaggg 34639711  T
Q  151 gatatgcacc 160  Q
    ||| ||||||    
T  34639712 gatctgcacc 34639721  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 16443111 - 16442961
Alignment:
Q  11 aattctctcatgtgactagagaggccagtgagatctaaatcatttatttttcactgctctatgtggagccctcactattgaagtaattgaatggtattga 110  Q
    ||||||||||||||||| ||||| || |||| ||||||| |||||||||| |||| ||  |||||    |||||  ||||||| ||||||||| ||||||    
T  16443111 aattctctcatgtgactggagagtccggtgatatctaaaccatttattttccactacttcatgtgagatcctcaacattgaagcaattgaatgatattga 16443012  T
Q  111 tgttcattgcactctctccattgaaaatttcactggaggggatatgcaccc 161  Q
    |||  | |||||||||||| || || |||||| ||| || ||| |||||||    
T  16443011 tgtcaactgcactctctcctttaaatatttcattggcggagatttgcaccc 16442961  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 2805342 - 2805232
Alignment:
Q  181 tctctccatttattccatttgaagagaggaagacacaaagaaatataaaaataactaatattagtagtgtgactcacttagtggtaggacccgctacata 280  Q
    ||||||||||| |||||||| |||| |  ||||||||||||||| ||||||||| ||||| ||||||    || |||||| |||||| || | |||||||    
T  2805342 tctctccatttcttccatttaaagaaataaagacacaaagaaat-taaaaataattaatagtagtaga---acccacttaatggtagaactcactacata 2805247  T
Q  281 cttttttgtatctat 295  Q
    |||||||||||||||    
T  2805246 cttttttgtatctat 2805232  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 32957710 - 32957657
Alignment:
Q  242 tagtagtgtgactcacttagtggtaggacccgctacatacttttttgtatctat 295  Q
    |||||||| || ||||||||||||| || || ||||||||||||||||||||||    
T  32957710 tagtagtgggattcacttagtggtaagatccactacatacttttttgtatctat 32957657  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 5355444 - 5355488
Alignment:
Q  251 gactcacttagtggtaggacccgctacatacttttttgtatctat 295  Q
    |||||||||| |||||||| || ||||||||||||||||||||||    
T  5355444 gactcacttaatggtaggatccactacatacttttttgtatctat 5355488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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