View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_26 (Length: 297)
Name: NF5782_low_26
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 6069544 - 6069813
Alignment:
| Q |
16 |
caaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaaattttttagacttgacactgaaatgagtgacgtgcagtta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||| |
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| T |
6069544 |
caaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaatttttttagatttgacactgaaattagtgatgtgcagttt |
6069643 |
T |
|
| Q |
116 |
actgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaaagacaaaatttccaattcttcaagatttttaa |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6069644 |
actgcatttaacattgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaaagacaaaatttccaattcttcaagctttttaa |
6069743 |
T |
|
| Q |
216 |
tgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgatacaacgtcgat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6069744 |
tgctttcaggcaacctcttcatgttgcttccatcaaggtttaattccattaactttgatacaacgtcgat |
6069813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 6193930 - 6194195
Alignment:
| Q |
16 |
caaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaaattttttagacttgacactgaaatgagtgacgtgcagtta |
115 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| || || ||||||||| |
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| T |
6193930 |
caaattcaagctgttgctgaatgaaatatgtttggtttttccgatcatctttgttgctaatttttttagatttgacactgaaaccagcgatgtgcagtta |
6194029 |
T |
|
| Q |
116 |
actgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaaagacaaaatttccaattcttcaagatttttaa |
215 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| || |||| |
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| T |
6194030 |
actgcatttaacagtgtgattagaggtggaagctctggtatgcactcaagcttcctgcaattcaccaaagacaaaatttccagttcttcaagtttcttaa |
6194129 |
T |
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| Q |
216 |
tgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgatacaacgt |
281 |
Q |
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|||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
6194130 |
tgctttgaggcaacattttcatgttgcttccatcaaggtttaattccattaactttgatgcaacgt |
6194195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 37453044 - 37452779
Alignment:
| Q |
16 |
caaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaaattttttagacttgacactgaaatgagtgacgtgcagtta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| || || |||||||| |
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| T |
37453044 |
caaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatcattgttgctaatccttttagatttgacactgaaaccagggatgtgcagttc |
37452945 |
T |
|
| Q |
116 |
actgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaaagacaaaatttccaattcttcaagatttttaa |
215 |
Q |
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|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||| || |||| |
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| T |
37452944 |
actgcatttaacagtgtgacgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaaagaaagaatttccagttcttcaagtttcttaa |
37452845 |
T |
|
| Q |
216 |
tgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgatacaacgt |
281 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
37452844 |
tgctttcaggcaaccttttcatgttgctcccatcaaggtttaattcctttaactttgatagaacgt |
37452779 |
T |
|
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