View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_27 (Length: 292)
Name: NF5782_low_27
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_27 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 48823696 - 48823974
Alignment:
| Q |
17 |
agtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaatgataattaaaa |
116 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48823696 |
agtttagagagttcatctacaatgtataagtacttaaaagcaaaattacatgacaatactcaaacaagtcaaggggttaagccaccaatgataattaaaa |
48823795 |
T |
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| Q |
117 |
gcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaattgatactgccttgttattaaaaatcat |
216 |
Q |
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| T |
48823796 |
acaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcatctcttgtccactaattcatcaattgatagtgccttgttattaaaaatcat |
48823895 |
T |
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| Q |
217 |
attattatgttttttcca--------taacactcaagtgtacgttagccaaattaaaataagagtcgaacgaaagcgtt |
287 |
Q |
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| T |
48823896 |
attattatattctttccatatataattaacacccaagtatacgttagccaaattaaaataagagtcgaacgaaagcgtt |
48823974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 81 - 276
Target Start/End: Original strand, 21547964 - 21548160
Alignment:
| Q |
81 |
caagccaaggggttaagccaccaa---tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccac |
177 |
Q |
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||||||||||| ||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
21547964 |
caagccaagggattaagccgccaacaatgatagcgaaaagcaaaaattacatgtttcgccttcagccaccaaaaagaaagtagcttcacct--tatccac |
21548061 |
T |
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| Q |
178 |
taattcatcaattgatactgccttgttattaaaaatcatattattatgttttttccataacactcaagtgtacgttagccaaattaaaataagagtcga |
276 |
Q |
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| T |
21548062 |
taatttatcaatcgataatgccttgtcgttaaaaattttgttattacgttctttccataacacccaagtgcacgttagccaaattaaaataagaatcga |
21548160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 24433875 - 24433987
Alignment:
| Q |
52 |
aaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaa---tgataattaaaagcaaaaattatatgtttcgccttcagccacca |
148 |
Q |
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| T |
24433875 |
aaaagcaaaattacatggcaatacccaaacaagccaatgtattaaaccaccaacaatgataactaaaagcaaaaattatatgtttcgtcttcagcca-ca |
24433973 |
T |
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| Q |
149 |
aaaagagagtagct |
162 |
Q |
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|||||| ||||||| |
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| T |
24433974 |
aaaagaaagtagct |
24433987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 6041356 - 6041492
Alignment:
| Q |
49 |
ctgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaatgataattaaaagcaaaaattatatgtttcgccttcagccacca |
148 |
Q |
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| T |
6041356 |
ctgaaaagcaaaattacatagcaatacccaaataagccaagggattaagccaccaacaataat--agcgcaaaaattacatgtttccccttcaaccacca |
6041453 |
T |
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| Q |
149 |
aaaagagagtagcttcacctcttgtccactaattcatcaat |
189 |
Q |
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| T |
6041454 |
aaaagaaagtggctttac--cttgtctgctaattcatcaat |
6041492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 273
Target Start/End: Complemental strand, 24869851 - 24869632
Alignment:
| Q |
55 |
agcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaa---tgataattaaaagcaaaaattatatgtttcgccttcagccaccaaaa |
151 |
Q |
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| T |
24869851 |
agcaaaattacatgctaatatccaaacaaaccaagggattaagccaccaacaatgataactaaaagcaaaaattacatatttctccttcagccacaaaaa |
24869752 |
T |
|
| Q |
152 |
agagagtagcttcacctcttgtccactaattcatcaattgatactgccttgttattaaaaatcatattattatgttttttccataacactcaagtgtacg |
251 |
Q |
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||| || ||||| || | ||||||||||||||| ||| || | |||||||||||||||||||| ||||| ||| |||||||| ||| ||| || ||| |
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| T |
24869751 |
agatagcagcttaactt--tgtccactaattcataaatcgaagcggccttgttattaaaaatcatgttatttcgttctttccatatcacccaaatgcacg |
24869654 |
T |
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| Q |
252 |
ttagccaaattaaaataagagt |
273 |
Q |
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| T |
24869653 |
ttagccatattacaagaagagt |
24869632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 39718366 - 39718194
Alignment:
| Q |
17 |
agtttagagagttcatctacaatgtataaatactgaaaagcaaaattacatgacaatactcaaacaagccaaggggttaagccaccaa---tgataatta |
113 |
Q |
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|||||| | ||||||||||| ||||| || |||||||||| ||||||||| | |||| |||||| ||||| || |||||||||||| |||||| || |
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| T |
39718366 |
agtttacaaagttcatctactatgtacaagtactgaaaagaaaaattacacggtgatacccaaacatgccaaaggattaagccaccaacagtgataacta |
39718267 |
T |
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| Q |
114 |
aaagcaaaaattatatgtttcgccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaa |
188 |
Q |
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||||||||| ||| |||||||| |||||||||||||||| | |||| |||||| |||||||||||||||||||| |
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| T |
39718266 |
aaagcaaaatttacatgtttcgacttcagccaccaaaaaaaaagtaacttcac--cttgtccactaattcatcaa |
39718194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 23653 - 23554
Alignment:
| Q |
135 |
gccttcagccaccaaaaagagagtagcttcacctcttgtccactaattcatcaattgatactgccttgttattaaaaatcatattattatgttttttcca |
234 |
Q |
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| T |
23653 |
gccttcagccaccaaaaagagagtagcttaac--gttgtccaccagtccagaaatagacactaccttgttattaaaaatcttgttattgcgttttttcca |
23556 |
T |
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