View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_34 (Length: 251)
Name: NF5782_low_34
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_34 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 48824288 - 48824200
Alignment:
| Q |
163 |
cgtcttgttggtgtaattgaaataaataaatatggtttattgagtttgttataatttctttttgaaggattataatttaaaggtataaa |
251 |
Q |
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| T |
48824288 |
cgtcttgttggtgtaattgaaataaataaatatggtttattgagtttgttataatttctttttgaaggattataatttaaagttataaa |
48824200 |
T |
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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 48824441 - 48824362
Alignment:
| Q |
9 |
gaagaaaataggtttccttatatataagtggaataagagattttgggccgattttttcattatctcaattataaccttaa |
88 |
Q |
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| T |
48824441 |
gaagaaaataggtttccttatatataagtggaataagagattttggaccgattttttcattatttcaattataaccttaa |
48824362 |
T |
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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 55360 - 55410
Alignment:
| Q |
167 |
ttgttggtgtaattgaaataaataaatatggtttattgagtttgttataat |
217 |
Q |
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| T |
55360 |
ttgtttgtgtaattgaaaaagataaatatggtttattgggtttgttataat |
55410 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 2513367 - 2513315
Alignment:
| Q |
167 |
ttgttggtgtaattgaaataaataaatatggtttattgagtttgttataattt |
219 |
Q |
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| T |
2513367 |
ttgttggtgtcattgaaatagataaacatggttaatttagtttgttataattt |
2513315 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 12542771 - 12542723
Alignment:
| Q |
40 |
aataagagattttgggccgattttttcattatctcaattataaccttaa |
88 |
Q |
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| T |
12542771 |
aatatgagattttgggctgactttttcattatgtcaattatacccttaa |
12542723 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 33490655 - 33490699
Alignment:
| Q |
172 |
ggtgtaattgaaataaataaatatggtttattgagtttgttataa |
216 |
Q |
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| T |
33490655 |
ggtgtgattgaaataaataaacatggtttcttcagtttgttataa |
33490699 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 35402799 - 35402747
Alignment:
| Q |
167 |
ttgttggtgtaattgaaataaataaatatggtttattgagtttgttataattt |
219 |
Q |
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| T |
35402799 |
ttgttggtgtaattgaaatacaaaattatggttagtttagtttgttataattt |
35402747 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 40368092 - 40368144
Alignment:
| Q |
167 |
ttgttggtgtaattgaaataaataaatatggtttattgagtttgttataattt |
219 |
Q |
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| T |
40368092 |
ttgttggtgtcattgaaaaagataaacatggtttgttgggtttgttataattt |
40368144 |
T |
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