View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_38 (Length: 237)
Name: NF5782_low_38
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 47827252 - 47827044
Alignment:
| Q |
13 |
tcatcatgtcaacatgtacaactaattaaatttatcttataagagagtatatatgtcttacatttttgaaagtaggtaagccgtgataatcctggaatag |
112 |
Q |
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| T |
47827252 |
tcatcatgtcaacatgtacaactaattaaatttatcttataagagagtatatatgtcttacatttttgaaagtaggtaagccgtgataatcctggaatag |
47827153 |
T |
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| Q |
113 |
agcgagttctttaaagacggatgccccatctaatttcttcatctccactgcatcagaatttctttggatccatgattcaagaaggtcaaatgaaagctgc |
212 |
Q |
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| T |
47827152 |
agcgagttctttaaagactgatgccccatctaatttcttcatctccactgcatcagaatttctttggatccatgattcaagaaggtcaaatgaaagctgc |
47827053 |
T |
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| Q |
213 |
aaatgaaag |
221 |
Q |
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| T |
47827052 |
aaatgaaag |
47827044 |
T |
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