View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5782_low_4 (Length: 584)

Name: NF5782_low_4
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5782_low_4
NF5782_low_4
[»] chr2 (6 HSPs)
chr2 (65-574)||(23382487-23382998)
chr2 (31-67)||(37480073-37480109)
chr2 (31-64)||(31245484-31245517)
chr2 (18-66)||(42602553-42602602)
chr2 (18-65)||(42327423-42327471)
chr2 (18-65)||(42922414-42922462)
[»] chr4 (8 HSPs)
chr4 (18-66)||(51250550-51250599)
chr4 (18-67)||(27965538-27965588)
chr4 (18-65)||(9241053-9241101)
chr4 (17-65)||(52054014-52054062)
chr4 (31-65)||(19238619-19238653)
chr4 (31-65)||(55427242-55427276)
chr4 (18-66)||(37720242-37720291)
chr4 (18-65)||(37109379-37109427)
[»] chr7 (10 HSPs)
chr7 (18-65)||(19553454-19553501)
chr7 (19-67)||(30579333-30579382)
chr7 (18-65)||(48771938-48771986)
chr7 (31-66)||(41487361-41487396)
chr7 (31-65)||(30442488-30442522)
chr7 (18-65)||(25021363-25021411)
chr7 (18-65)||(25590611-25590659)
chr7 (18-65)||(26459438-26459486)
chr7 (30-66)||(35328915-35328951)
chr7 (18-65)||(42836029-42836077)
[»] chr3 (16 HSPs)
chr3 (31-66)||(9832496-9832531)
chr3 (21-66)||(10499140-10499186)
chr3 (21-66)||(26988995-26989040)
chr3 (18-66)||(31520633-31520682)
chr3 (31-66)||(8051213-8051248)
chr3 (19-65)||(16991542-16991589)
chr3 (18-65)||(51766896-51766943)
chr3 (31-65)||(24459990-24460024)
chr3 (18-58)||(2667869-2667910)
chr3 (18-66)||(5499435-5499484)
chr3 (18-66)||(27093389-27093438)
chr3 (18-66)||(36720380-36720429)
chr3 (18-66)||(46518627-46518676)
chr3 (18-65)||(4222141-4222189)
chr3 (77-129)||(14026533-14026585)
chr3 (18-65)||(31788998-31789046)
[»] chr6 (5 HSPs)
chr6 (18-66)||(31623019-31623068)
chr6 (18-67)||(12188331-12188381)
chr6 (18-66)||(33549103-33549152)
chr6 (18-61)||(6776635-6776679)
chr6 (18-65)||(30127400-30127448)
[»] chr1 (9 HSPs)
chr1 (18-66)||(40257398-40257447)
chr1 (77-125)||(39305824-39305872)
chr1 (31-65)||(19528369-19528403)
chr1 (18-63)||(33700801-33700847)
chr1 (18-66)||(36371469-36371518)
chr1 (21-65)||(37310007-37310052)
chr1 (18-66)||(41508830-41508879)
chr1 (18-66)||(42412708-42412756)
chr1 (18-65)||(9165223-9165271)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-65)||(112282-112330)
[»] chr8 (8 HSPs)
chr8 (18-65)||(30483912-30483960)
chr8 (17-62)||(36042984-36043030)
chr8 (18-66)||(16852339-16852388)
chr8 (31-68)||(22268975-22269012)
chr8 (18-66)||(28783059-28783108)
chr8 (18-65)||(968362-968410)
chr8 (30-66)||(5264543-5264579)
chr8 (18-73)||(35641929-35641985)
[»] chr5 (6 HSPs)
chr5 (31-65)||(21589288-21589322)
chr5 (17-65)||(6844729-6844778)
chr5 (18-66)||(30109336-30109385)
chr5 (18-65)||(21549165-21549213)
chr5 (18-65)||(25627057-25627105)
chr5 (18-65)||(29075781-29075829)
[»] scaffold0417 (1 HSPs)
scaffold0417 (20-68)||(10216-10265)
[»] scaffold0291 (1 HSPs)
scaffold0291 (18-65)||(2498-2546)
[»] scaffold0258 (1 HSPs)
scaffold0258 (18-65)||(15351-15399)
[»] scaffold0172 (1 HSPs)
scaffold0172 (34-66)||(32814-32846)


Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 65 - 574
Target Start/End: Complemental strand, 23382998 - 23382487
Alignment:
Q  65 ttgggatacggagaaattattattaataagaatgacactaatgacagttttacaattgtctccgaggagatttgaaatttatcggttaagacttcaaagt 164  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23382998 ttgggaaacggagaaattattattaataagaatgacgctaatgacatgtttacaattgtctccgaggagatttgaaatttatcggtttagacttcaaagt 23382899  T
Q  165 caactctcacctcggcgctgacataaaataactcgtttcattatattacataaaaggaaatatgaaatattgtagaaatacatttttattttctttgctt 264  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23382898 caactctcacctcggcgctgacagaaaataactcgtttcattatattacataaaaagaaatatgaaatattgtagaaatacatttttattttctttgctt 23382799  T
Q  265 ctcatgtatcagatatggctgtggagtgcacaattatgctagcagaggcgaatgcttcaagtgcaaaacacccaaaagttttggtatgtgatgtttatcc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  23382798 ctcatgtatcagatatggctgtggagtgcacaattatgctagcagaggcgaatgcttcaagtgcaaaacacccaaaagttttggtatgaaatgtttatcc 23382699  T
Q  365 ttcattacttaaagtatatgctattcaacctcattagacccataatgcttatataa--aatttctatttcaggtggttcagattgaaagaagaatttcag 462  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  23382698 ttcattacttaaagtatatgctattcaacctcattagatccatgatgcttatataattaatttctatttcaggtggttcagattgaaagaagaatttcag 23382599  T
Q  463 ctgtcaccggcttcgttcacagctttcttctgcgattaacattcgatcttgctctccaaagtgttgagtgatcatggacaaaggtcctttgttagcatca 562  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23382598 ctgtcaccggcttcgttcacagccttcttctgcgattaacattcgatcttgctctccaaagtgttgagtgatcatggacaaaggtcctttgttagcatca 23382499  T
Q  563 tcacagcctttg 574  Q
    ||||||||||||    
T  23382498 tcacagcctttg 23382487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 37480109 - 37480073
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtttg 67  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37480109 ccaagccaataccaccaggccaacccaagtgggtttg 37480073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 31245517 - 31245484
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggt 64  Q
    ||||||||| ||||||||||||||||||||||||    
T  31245517 ccaagccaacaccaccgggccaacccaagtgggt 31245484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 42602602 - 42602553
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  42602602 cacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 42602553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42327423 - 42327471
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  42327423 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 42922462 - 42922414
Alignment:
Q  18 cacactcccagat-ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| | |||||||||||||||  ||||||||||||||||||    
T  42922462 cacactcccaggttccaagccaataccactaggccaacccaagtgggtt 42922414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 51250550 - 51250599
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  51250550 cacactcccagatcccaagccaataccaccaggccaacccaagtgggttt 51250599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27965538 - 27965588
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtttg 67  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  27965538 cacactcccagatcccaagccaataccactaggccaacccaagtgggtttg 27965588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9241053 - 9241101
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  9241053 cacactaccagatcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 52054062 - 52054014
Alignment:
Q  17 acacactcccagatccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||||||| ||||| |||||  ||||||||||||||||    
T  52054062 acacactcccagatccaagtcaatatcaccgtaccaacccaagtgggtt 52054014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 19238619 - 19238653
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||| ||||||||||||||||||    
T  19238619 ccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 55427242 - 55427276
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||| ||||||||||||||||||    
T  55427242 ccaagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 37720242 - 37720291
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| ||| ||||||||| |||| |||||||||||||||||||    
T  37720242 cacactcccaggtcccaagccaataacaccaggccaacccaagtgggttt 37720291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 37109379 - 37109427
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  37109379 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 19553501 - 19553454
Alignment:
Q  18 cacactcccagatccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||    
T  19553501 cacactcccaggtccaagccaataccaccaggccaacccaagcgggtt 19553454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 30579382 - 30579333
Alignment:
Q  19 acactcccagatc-caagccaataccaccgggccaacccaagtgggtttg 67  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  30579382 acactcccaggtctcaagccaataccaccaggccaacccaagtgggtttg 30579333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 48771986 - 48771938
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  48771986 cacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 41487396 - 41487361
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||||||||| |||||||||||||||||||    
T  41487396 ccaagccaataccaccaggccaacccaagtgggttt 41487361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 30442522 - 30442488
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||| |||||||||||||||||||    
T  30442522 ccaagccaataccactgggccaacccaagtgggtt 30442488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 25021363 - 25021411
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  25021363 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 25590659 - 25590611
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||| ||||||||||||| | || |||||||||||||||    
T  25590659 cacactcccagatctcaagccaataccaacaggtcaacccaagtgggtt 25590611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26459438 - 26459486
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  26459438 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 35328915 - 35328951
Alignment:
Q  30 tccaagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||| |||||| |||||||||||||||||||    
T  35328915 tccaagccaacaccaccaggccaacccaagtgggttt 35328951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 42836029 - 42836077
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  42836029 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 9832531 - 9832496
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  9832531 ccaagccaataccaccgggccaacccaagtgggttt 9832496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 10499140 - 10499186
Alignment:
Q  21 actcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  10499140 actcccagatcccaagccaataccaccaggccaacccaagtgggttt 10499186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26989040 - 26988995
Alignment:
Q  21 actcccagatccaagccaataccaccgggccaacccaagtgggttt 66  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||    
T  26989040 actctcagatccaagccaataccactaggccaacccaagtgggttt 26988995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31520633 - 31520682
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  31520633 cacactcccagatcccaagccaatgccaccaggccaacccaagtgggttt 31520682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 8051248 - 8051213
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||||||||| |||||||||||||||||||    
T  8051248 ccaagccaataccaccaggccaacccaagtgggttt 8051213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 16991589 - 16991542
Alignment:
Q  19 acactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  16991589 acactcccagatcccaagccaataccaccaggccaacccaaatgggtt 16991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 51766943 - 51766896
Alignment:
Q  18 cacactcccagatccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||||| |||||||| ||| | ||||||||||||||    
T  51766943 cacactcccagatccaagtcaataccatcggactaacccaagtgggtt 51766896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 24460024 - 24459990
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||| ||||||||||||||||||    
T  24460024 ccaagccaataccaccaggccaacccaagtgggtt 24459990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2667910 - 2667869
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaa 58  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  2667910 cacactcccagatcccaagccaataccaccaggccaacccaa 2667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5499435 - 5499484
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||| |||||| |||| |||||||||| |||||||||||||||||||    
T  5499435 cacactctcagatctcaagtcaataccaccaggccaacccaagtgggttt 5499484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 27093389 - 27093438
Alignment:
Q  18 cacactccca-gatccaagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||| | ||||||||||||||||  |||||||||||||||||||    
T  27093389 cacactcccaagttccaagccaataccactaggccaacccaagtgggttt 27093438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 36720429 - 36720380
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||| |||| |||||||||||||| | |||||||||||||||||    
T  36720429 cacactcccatatcccaagccaataccaccagaccaacccaagtgggttt 36720380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 46518676 - 46518627
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  46518676 cacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 4222189 - 4222141
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||| |||||||||||||   |||||||||||||||||    
T  4222189 cacactcccagatcccaagccaataccactaagccaacccaagtgggtt 4222141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 14026585 - 14026533
Alignment:
Q  77 gaaattattattaataagaatgacactaatgacagttttacaattgtctccga 129  Q
    ||||||||||||||| | ||| | ||||||||||||||||| |||||| ||||    
T  14026585 gaaattattattaattaaaataaaactaatgacagttttactattgtccccga 14026533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 31788998 - 31789046
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||||||||    
T  31788998 cacactcccagatcccaagccaataacactaggccaacccaagtgggtt 31789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 31623019 - 31623068
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  31623019 cacactcccaggtcccaagccaataccaccggaccaacccaagtgggttt 31623068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12188331 - 12188381
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtttg 67  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||||    
T  12188331 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtttg 12188381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 33549152 - 33549103
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| ||| |||||||||||||| | |||||||||||||||||    
T  33549152 cacactcccaggtcccaagccaataccaccagaccaacccaagtgggttt 33549103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 6776635 - 6776679
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtg 61  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||||    
T  6776635 cacacccccagatcccaagccaataccaccaggccaacccaagtg 6776679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 30127448 - 30127400
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||| || |||||||||||||| | ||||||||||||||||    
T  30127448 cacactcccagaccccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 40257447 - 40257398
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  40257447 cacactcccaggtctcaagccaataccaccaggccaacccaagtgggttt 40257398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 39305872 - 39305824
Alignment:
Q  77 gaaattattattaataagaatgacactaatgacagttttacaattgtct 125  Q
    ||||||||||||||||| ||||||||||||||   ||||||||||||||    
T  39305872 gaaattattattaataacaatgacactaatgatcattttacaattgtct 39305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 19528369 - 19528403
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||| ||||||||||||||||||    
T  19528369 ccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 33700801 - 33700847
Alignment:
Q  18 cacactcccagat-ccaagccaataccaccgggccaacccaagtggg 63  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||    
T  33700801 cacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 36371518 - 36371469
Alignment:
Q  18 cacactcccagat-ccaagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| | |||||||||||||||  |||||||||||||||||||    
T  36371518 cacactcccaggttccaagccaataccactaggccaacccaagtgggttt 36371469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 37310007 - 37310052
Alignment:
Q  21 actcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||||    
T  37310007 actcccagatccgaagctaataccaccaggccaacccaagtgggtt 37310052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 41508879 - 41508830
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||| || ||| ||||||| |||||||||||||||||||    
T  41508879 cacactcccagatcccaaaccagtaccaccaggccaacccaagtgggttt 41508830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 42412708 - 42412756
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggttt 66  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  42412708 cacactcccagatctcaagcca-taccaccgggccaacccaagttggttt 42412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9165223 - 9165271
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  9165223 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 112330 - 112282
Alignment:
Q  18 cacactcccagat-ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  112330 cacactcccagattccaagccaatacaaccaggccaacccaagtgggtt 112282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 30483912 - 30483960
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  30483912 cacactcccatatcccaagccaataccactgggccaacccaagtgggtt 30483960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 36043030 - 36042984
Alignment:
Q  17 acacactccca-gatccaagccaataccaccgggccaacccaagtgg 62  Q
    ||||||||||| ||||||||||||||||||| | |||||||||||||    
T  36043030 acacactcccaagatccaagccaataccaccagcccaacccaagtgg 36042984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 16852388 - 16852339
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| ||| |||||||||||||  |||||||||||||||||||    
T  16852388 cacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 22268975 - 22269012
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtttgg 68  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  22268975 ccaagccaacaccaccaggccaacccaagtgggtttgg 22269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 28783108 - 28783059
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||||    
T  28783108 cacactcccaggtctcaagccaataccaccaagccaacccaagtgggttt 28783059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 968410 - 968362
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||| ||||||| ||||||||||    
T  968410 cacactcccaggtcccaagccaataccaccaggccaactcaagtgggtt 968362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5264579 - 5264543
Alignment:
Q  30 tccaagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5264579 tccaagccaataccactaggccaacccaagtgggttt 5264543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 35641929 - 35641985
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggtttgggatac 73  Q
    |||||||||| ||| |||||| |||||||| | ||||||||||||||||| ||||||    
T  35641929 cacactcccaaatctcaagccgataccaccagaccaacccaagtgggtttaggatac 35641985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 21589322 - 21589288
Alignment:
Q  31 ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||| ||||||||||||||||||    
T  21589322 ccaagccaataccaccaggccaacccaagtgggtt 21589288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 6844778 - 6844729
Alignment:
Q  17 acacactcccagat-ccaagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| || ||||| |||||||||| ||||||||||||||||||    
T  6844778 acacactcccaaattccaagtcaataccacctggccaacccaagtgggtt 6844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 30109336 - 30109385
Alignment:
Q  18 cacactcccagatc-caagccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||||    
T  30109336 cacactcccaggtcacaagccaataccaccaagccaacccaagtgggttt 30109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 21549165 - 21549213
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||    
T  21549165 cacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 25627105 - 25627057
Alignment:
Q  18 cacactccca-gatccaagccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||| | ||||||||||||||||  ||||||||||||||||||    
T  25627105 cacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 29075829 - 29075781
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||||||| |||||||||||||  ||| ||||||||||||||    
T  29075829 cacactcccagatcccaagccaataccactaggcaaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 10265 - 10216
Alignment:
Q  20 cactcccagatcc-aagccaataccaccgggccaacccaagtgggtttgg 68  Q
    ||||||||||||| ||||||||| || | |||||||||||||||||||||    
T  10265 cactcccagatcccaagccaatatcatcaggccaacccaagtgggtttgg 10216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 2498 - 2546
Alignment:
Q  18 cacactcccagatccaag-ccaataccaccgggccaacccaagtgggtt 65  Q
    |||||||||||||||||  ||||||||||||| ||||||||| ||||||    
T  2498 cacactcccagatccaaaaccaataccaccggaccaacccaaatgggtt 2546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 15351 - 15399
Alignment:
Q  18 cacactcccagatcc-aagccaataccaccgggccaacccaagtgggtt 65  Q
    ||||||||||| ||| |||||||||||||| | ||||||||||||||||    
T  15351 cacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 32814 - 32846
Alignment:
Q  34 agccaataccaccgggccaacccaagtgggttt 66  Q
    ||||||||||||| |||||||||||||||||||    
T  32814 agccaataccaccaggccaacccaagtgggttt 32846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University