View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_41 (Length: 215)
Name: NF5782_low_41
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_41 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 11642259 - 11642433
Alignment:
| Q |
11 |
aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtg--agatggaggaagtaattaatttttgtttgaagtgcgcaaaatt |
108 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11642259 |
aatattaatcattttcttaataaccatgtaaaactcaaatgagacacataatgtgtgagatggaggaagtaattaatttttgtttgaagtgcgcaaaatt |
11642358 |
T |
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| Q |
109 |
taaaatatgtaaaaagttcaatgctcaatgataaaactcttgctttgtaactttaatggaatattcactcttatt |
183 |
Q |
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| T |
11642359 |
taaaatatgtaaaaagttcaatgctcaatgataaaactctagctttgtaactttaatggaatgttcactcttatt |
11642433 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 28073571 - 28073626
Alignment:
| Q |
13 |
tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga |
68 |
Q |
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| T |
28073571 |
tattaattatttccttaataaccatgtaaaactcaaatgtgacacctaatgtgaga |
28073626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 6323355 - 6323289
Alignment:
| Q |
13 |
tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggaggaagta |
79 |
Q |
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| T |
6323355 |
tattaatcatttttttaataattgtgtaaaactcaaatgtgacacctgatgtgagacggagggagta |
6323289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 11024915 - 11024860
Alignment:
| Q |
13 |
tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga |
68 |
Q |
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| T |
11024915 |
tattaatcattttcttaatttccgtgtaaaactcaaatgagacacctaatatgaga |
11024860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 36217407 - 36217341
Alignment:
| Q |
13 |
tattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggaggaagta |
79 |
Q |
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| T |
36217407 |
tattaatcatttttttaataatcatgtaaaactcaaatgagacatctaatgtgaaactgaggaagta |
36217341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 40546252 - 40546194
Alignment:
| Q |
16 |
taatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgagatggagg |
74 |
Q |
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| T |
40546252 |
taatcatttctttaataactatgtaaaactcaaaatagacacttaatttgagatggagg |
40546194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 11027 - 10970
Alignment:
| Q |
11 |
aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga |
68 |
Q |
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| T |
11027 |
aatattaataatttttttaataacagtgtaaaactcaaataagacacatattgtgaga |
10970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 41287816 - 41287759
Alignment:
| Q |
11 |
aatattaatcattttcttaatgactatgtaaaactcaaatgagacacataatgtgaga |
68 |
Q |
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| T |
41287816 |
aatattaatcatttcctcaatacctatgtaaaactcaaatgtgacacctaatatgaga |
41287759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 41845272 - 41845316
Alignment:
| Q |
37 |
tgtaaaactcaaatgagacacataatgtgagatggaggaagtaat |
81 |
Q |
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| T |
41845272 |
tgtaaaactcaaatgagacacttaatgtgagacggggaaagtaat |
41845316 |
T |
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