View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5782_low_5 (Length: 582)

Name: NF5782_low_5
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5782_low_5
NF5782_low_5
[»] chr6 (3 HSPs)
chr6 (101-212)||(7368597-7368708)
chr6 (298-412)||(7368401-7368515)
chr6 (489-558)||(7368254-7368324)
[»] chr3 (4 HSPs)
chr3 (103-212)||(53159591-53159700)
chr3 (333-412)||(53161067-53161146)
chr3 (298-337)||(53159778-53159817)
chr3 (508-558)||(53161253-53161303)
[»] chr7 (6 HSPs)
chr7 (101-212)||(45632275-45632386)
chr7 (298-412)||(45632078-45632192)
chr7 (298-412)||(26643590-26643705)
chr7 (508-558)||(26643435-26643485)
chr7 (508-555)||(18565799-18565846)
chr7 (515-558)||(45631922-45631965)
[»] chr2 (4 HSPs)
chr2 (298-409)||(39905551-39905663)
chr2 (137-212)||(39905748-39905823)
chr2 (511-558)||(39905394-39905439)
chr2 (508-555)||(44483404-44483451)
[»] chr4 (3 HSPs)
chr4 (508-558)||(51032906-51032956)
chr4 (508-555)||(18809196-18809243)
chr4 (317-412)||(51032700-51032796)
[»] chr5 (1 HSPs)
chr5 (508-547)||(19833692-19833731)
[»] scaffold0164 (1 HSPs)
scaffold0164 (508-549)||(16553-16594)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 7368708 - 7368597
Alignment:
Q  101 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7368708 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactatagttattaaagaacaaatgaaagagtaaattaa 7368609  T
Q  201 tgattttgtgat 212  Q
    ||||||||||||    
T  7368608 tgattttgtgat 7368597  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 7368515 - 7368401
Alignment:
Q  298 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaatacgacctcttcctttttcagcaatagtactca 397  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7368515 tgcaccatattgaattgttaccggttatgcatcgttgtagcaattggaatgaagtcctagtgacaaatacggcctcttcctttttcagcaatagtactca 7368416  T
Q  398 cggttgttgttgatg 412  Q
    |||||||||||||||    
T  7368415 cggttgttgttgatg 7368401  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 489 - 558
Target Start/End: Complemental strand, 7368324 - 7368254
Alignment:
Q  489 gaaattagatttcaagtcg-ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7368324 gaaattagatttcaagtcacttgaaacatgccatacaatttaccatttcctttcaactcctctccctttag 7368254  T

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Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 53159591 - 53159700
Alignment:
Q  103 aaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatg 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53159591 aaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatg 53159690  T
Q  203 attttgtgat 212  Q
    ||||||||||    
T  53159691 attttgtgat 53159700  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 53161067 - 53161146
Alignment:
Q  333 tgtagcaattggaatgaagtcctagtgacaaa-tacgacctcttcctttttcagcaatagtactcacggttgttgttgatg 412  Q
    |||||||| | ||||||||||||||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||    
T  53161067 tgtagcaacttgaatgaagtcctagtgacaaaatacgtc-tcttcctttttcagcaataatactcacggttgttgttgatg 53161146  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 53159778 - 53159817
Alignment:
Q  298 tgcaccatattgaattgttaccggttatggatcgttgtag 337  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53159778 tgcaccatattgaattgttaccggttatggatcgttgtag 53159817  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 53161253 - 53161303
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  53161253 ttgaaacatgccatagaatttaccagttactttcaactcctccccctttag 53161303  T

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Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 45632386 - 45632275
Alignment:
Q  101 ttaaagaaacaaagggaagaagcccataatgtcaaaccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaa 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45632386 ttaaagaaacaaagggaaaaagcccataatgtcaaaccggcgacactttaactgccacggtcactctagttattaaagaacaaatgaatgagtaaattaa 45632287  T
Q  201 tgattttgtgat 212  Q
    || |||||||||    
T  45632286 tggttttgtgat 45632275  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 45632192 - 45632078
Alignment:
Q  298 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||| |||||||||||||||||||    
T  45632192 tgcaccatattgaattgttaccggttatggatcgttgtagcaactggaatgaagtcctagtgacaaaatacg-tctcttcatttttcagcaatagtactc 45632094  T
Q  397 acggttgttgttgatg 412  Q
    ||||||||||||||||    
T  45632093 acggttgttgttgatg 45632078  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 298 - 412
Target Start/End: Complemental strand, 26643705 - 26643590
Alignment:
Q  298 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactc 396  Q
    ||||||||||| | || ||||||||||||||||| | |||| | ||| |||||||| ||||| ||||  |||  ||||||| ||||||||||||||||||    
T  26643705 tgcaccatatttagttattaccggttatggatcgctttagcgactggtatgaagtcgtagtggcaaaacacggtctcttcccttttcagcaatagtactc 26643606  T
Q  397 acggttgttgttgatg 412  Q
    ||| ||||||||||||    
T  26643605 acgattgttgttgatg 26643590  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 26643485 - 26643435
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  26643485 ttgaaacatgccatggaatttaccatttcctttcaactcctttccctttag 26643435  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 18565846 - 18565799
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 555  Q
    |||||| | |||||||||||| |||||||||||||||||||| |||||    
T  18565846 ttgaaatacgccatagaattttccatttcctttcaactcctccccctt 18565799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 558
Target Start/End: Complemental strand, 45631965 - 45631922
Alignment:
Q  515 atgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  45631965 atgccatagaatttaccatttcatttcaactccttcccctttag 45631922  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 39905663 - 39905551
Alignment:
Q  298 tgcaccatattgaattgttaccggttatggatcgttgtagcaattggaatgaagtcctagtgac-aaatacgacctcttcctttttcagcaatagtactc 396  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||| |||||||||||||||| ||| ||| |||||||| |||||||   | ||||||    
T  39905663 tgcaccatatttaattgttaccggttatggatctttttagcaactggtatgaagtcctagtgacaaaacacggcctcttcccttttcagttgtggtactc 39905564  T
Q  397 acggttgttgttg 409  Q
    || ||||||||||    
T  39905563 accgttgttgttg 39905551  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 39905823 - 39905748
Alignment:
Q  137 ccggcgacaccttaactgccacggtcactctagttattaaagaacaaatgaaagagtaaattaatgattttgtgat 212  Q
    |||||||||||||||||| ||||||||||| |||||| || || ||| ||||||||||||||||||||||||||||    
T  39905823 ccggcgacaccttaactgtcacggtcactccagttataaatgaccaactgaaagagtaaattaatgattttgtgat 39905748  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 511 - 558
Target Start/End: Complemental strand, 39905439 - 39905394
Alignment:
Q  511 aaacatgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||    
T  39905439 aaacatgctatagaatttaccatttcctttcaa--cctctccctttag 39905394  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Original strand, 44483404 - 44483451
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 555  Q
    |||||||| |||||||||||| | |||||||||||||||||| |||||    
T  44483404 ttgaaacacgccatagaattttcaatttcctttcaactcctccccctt 44483451  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 51032906 - 51032956
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctttag 558  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  51032906 ttgaaacatgccataaaatttgccatttcctttcaactcctttccctttag 51032956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 555
Target Start/End: Complemental strand, 18809243 - 18809196
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctctccctt 555  Q
    |||||||| | |||||||||| |||||||||||||||||||| |||||    
T  18809243 ttgaaacacgtcatagaattttccatttcctttcaactcctccccctt 18809196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 412
Target Start/End: Original strand, 51032700 - 51032796
Alignment:
Q  317 accggttatggatcgttgtagcaattggaatgaagtcctagtgacaaat-acgacctcttcctttttcagcaatagtactcacggttgttgttgatg 412  Q
    ||||||||||||||||| |||| |  || |||||||  ||||| ||||  ||| |||||||| |||||||||||| |||||||  || |||||||||    
T  51032700 accggttatggatcgttttagcgaccggtatgaagttgtagtggcaaaacacggcctcttcccttttcagcaataatactcaccatttttgttgatg 51032796  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 547
Target Start/End: Complemental strand, 19833731 - 19833692
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcc 547  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  19833731 ttgaaacacgccatagaattttccatttcctttcaactcc 19833692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 549
Target Start/End: Complemental strand, 16594 - 16553
Alignment:
Q  508 ttgaaacatgccatagaatttaccatttcctttcaactcctc 549  Q
    |||||||| ||||||||||||  |||||||||||||||||||    
T  16594 ttgaaacacgccatagaatttttcatttcctttcaactcctc 16553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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