View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5782_low_7 (Length: 541)

Name: NF5782_low_7
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5782_low_7
NF5782_low_7
[»] chr6 (6 HSPs)
chr6 (19-531)||(14585653-14586170)
chr6 (57-459)||(14610650-14611053)
chr6 (470-531)||(14620640-14620701)
chr6 (19-60)||(14610201-14610242)
chr6 (439-531)||(31706348-31706440)
chr6 (439-521)||(22532104-22532186)
[»] scaffold0048 (1 HSPs)
scaffold0048 (439-513)||(64220-64294)
[»] chr4 (6 HSPs)
chr4 (441-530)||(55261568-55261657)
chr4 (469-529)||(9690001-9690061)
chr4 (438-521)||(32348778-32348861)
chr4 (469-519)||(53569598-53569648)
chr4 (439-521)||(56337969-56338051)
chr4 (436-493)||(34317976-34318033)
[»] chr7 (2 HSPs)
chr7 (440-521)||(30802246-30802327)
chr7 (470-521)||(27724606-27724657)
[»] chr5 (3 HSPs)
chr5 (438-497)||(24177224-24177283)
chr5 (436-518)||(13735356-13735438)
chr5 (438-519)||(5909533-5909614)
[»] chr3 (4 HSPs)
chr3 (439-513)||(15792758-15792832)
chr3 (469-530)||(4963942-4964003)
chr3 (437-510)||(5789950-5790023)
chr3 (437-533)||(34828994-34829090)
[»] chr2 (3 HSPs)
chr2 (441-519)||(31265814-31265892)
chr2 (437-503)||(44941283-44941349)
chr2 (469-530)||(6822992-6823053)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 14585653 - 14586170
Alignment:
Q  19 ttattcaagataatatcacaattgcttgacgaatccctctaaggatctttggttccctttgaaatgaacaaatttttagatttgtttggatctcatacct 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14585653 ttattcaagataatatcacaattgcttgacgaatccctctgaggatctttggttccctttgaaatgaacaaatttttagatttgtttggatttcatacct 14585752  T
Q  119 gtggtaaaccaaaggagataaatttatctgatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccat 218  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14585753 gtggtaaaccaaaggagataaattcatcagatacataggattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccat 14585852  T
Q  219 ttattttttggttagatcttatggaattcaaagaaggga----nnnnnnnnnncaaattcattacattatggaatggttaccac--aaaaatttcattgt 312  Q
    ||||||||||||||||||||||||| |||||||||||||              ||||||||||||||||||||||| |||||||  ||||| || |||||    
T  14585853 ttattttttggttagatcttatggatttcaaagaagggattttttttttctttcaaattcattacattatggaatgattaccacaaaaaaaatttattgt 14585952  T
Q  313 aaaaaatctatctttaaaattattagagtctgataatgaaaatgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtgttaaatat 412  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  14585953 aaaaaatctatctttaaaattattagagtctaataatgaaaatgattgcgagattgtggtaacttgtgatgctttttctacccaaca-cgtgttaaatat 14586051  T
Q  413 ttggtgatagatttttatgatcactttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgttt 512  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||| ||||||||| ||||||||    
T  14586052 ttggtgatagatttttatgatcgctttggtggctgaaaactaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgttt 14586151  T
Q  513 gtgtatcgatcgacctttg 531  Q
    | |||| ||| ||||||||    
T  14586152 gcgtattgattgacctttg 14586170  T

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Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 57 - 459
Target Start/End: Original strand, 14610650 - 14611053
Alignment:
Q  57 ctaaggatctttggttccctttgaaatgaacaaatttttagatttgtttggatctcatacctgtggtaaaccaaaggagataaatttatctgatacatag 156  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  14610650 ctaaggatctttggttccctttgaaatgtacaaatttttagatttgtttggatctcatacctgtggtaaaccaaaggagataaattcatcagatacatag 14610749  T
Q  157 gattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggaattcaaagaaggg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14610750 gattcaaagtcatgatggttgagcacacgaggaaggtttcaacatcaatttctaaaaaccatttattttttggttagatcttatggatttcaaagaaggg 14610849  T
Q  257 annnnnnnnnncaaattcattacattatggaatggttaccac---aaaaatttcattgtaaaaaatctatctttaaaattattagagtctgataatgaaa 353  Q
    |          |||||||||||||||||||||||||||||||   ||||| |||||||||||| |||||||||||||||||||  ||||||| ||||||     
T  14610850 attttttttttcaaattcattacattatggaatggttaccacaaaaaaaaattcattgtaaaagatctatctttaaaattatt--agtctgaaaatgaat 14610947  T
Q  354 atgattgcgagattgtggtaacttgtgttgctttttctacccaacatggtgttaaatatttggtgatagatttttatgatcactttggtggctgaaagct 453  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||    
T  14610948 atgattacgagattgtggtaacttgtgttgctttttctacccaacacggtgttaaatatttggtgatagattttaatgatcgctttagtggctgaaagct 14611047  T
Q  454 aataat 459  Q
    ||||||    
T  14611048 aataat 14611053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 470 - 531
Target Start/End: Original strand, 14620640 - 14620701
Alignment:
Q  470 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttg 531  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||||||    
T  14620640 tgtatggttcttagagatggtggtcggatcctttgctttgtttgcgtatcaatcgacctttg 14620701  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 14610201 - 14610242
Alignment:
Q  19 ttattcaagataatatcacaattgcttgacgaatccctctaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14610201 ttattcaagataatatcacaattgcttgacgaatccctctaa 14610242  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 531
Target Start/End: Complemental strand, 31706440 - 31706348
Alignment:
Q  439 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttg 531  Q
    |||||||| ||||||||||||||||| |  ||||  || ||| |||||||||||| ||| | |||| |||||||| |||||||  ||||||||    
T  31706440 tggtggctaaaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttg 31706348  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 521
Target Start/End: Complemental strand, 22532186 - 22532104
Alignment:
Q  439 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 521  Q
    |||||||| ||||||| ||| |||||||  ||||| |||||| | || ||||||||||||||| | ||||||||  |||||||    
T  22532186 tggtggctaaaagctagtaaagccacatttgtgtacggttctcaaaggtggtggttggatcctatgctttgtttaggtatcga 22532104  T

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Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 439 - 513
Target Start/End: Original strand, 64220 - 64294
Alignment:
Q  439 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 513  Q
    |||||||| || || |||||||||||||  ||||| |||||| ||||||| |||| |||||||||||||||||||    
T  64220 tggtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttg 64294  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 530
Target Start/End: Complemental strand, 55261657 - 55261568
Alignment:
Q  441 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 530  Q
    ||||||||||||||| || ||||| |  |||||||||||| |||||||||||||||| || ||||||||  || |||||||  |||||||    
T  55261657 gtggctgaaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgaccttt 55261568  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 529
Target Start/End: Complemental strand, 9690061 - 9690001
Alignment:
Q  469 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctt 529  Q
    |||||||||||| | |||||||||| | | ||||||||||||||| ||||||| |||||||    
T  9690061 gtgtatggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgaccgacctt 9690001  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 521
Target Start/End: Original strand, 32348778 - 32348861
Alignment:
Q  438 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 521  Q
    |||||||||||||||||| |  ||||  |  ||||| |||||| |||||||||||| |||||||||  |||||||| |||||||    
T  32348778 ttggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcga 32348861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Complemental strand, 53569648 - 53569598
Alignment:
Q  469 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 519  Q
    ||||| |||||| |||||||||||| ||| ||||||||||||||| |||||    
T  53569648 gtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatc 53569598  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 521
Target Start/End: Original strand, 56337969 - 56338051
Alignment:
Q  439 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 521  Q
    |||||||| |||||||| |||||||| |  || ||||||||| | |||||||||||||| |  || ||||||||| |||||||    
T  56337969 tggtggctaaaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcga 56338051  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 34318033 - 34317976
Alignment:
Q  436 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggt 493  Q
    |||||||||||||| ||||||||||||||||   |||| |||||| | ||||||||||    
T  34318033 ctttggtggctgaaggctaataatgccacattcatgtacggttctcatagatggtggt 34317976  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 440 - 521
Target Start/End: Original strand, 30802246 - 30802327
Alignment:
Q  440 ggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 521  Q
    ||||||||||||||||||| ||||| |  ||||| |||||| ||||| |||||| ||| |||||  |||||||| |||||||    
T  30802246 ggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcga 30802327  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 27724606 - 27724657
Alignment:
Q  470 tgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcga 521  Q
    |||| |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  27724606 tgtacggttctcaaagatggtggtcggatcctttactttgtttgggtatcga 27724657  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 497
Target Start/End: Complemental strand, 24177283 - 24177224
Alignment:
Q  438 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttgga 497  Q
    |||||||||||||||||| || ||||| |   ||||||||||| ||||||||||||||||    
T  24177283 ttggtggctgaaagctaacaaagccacttttatgtatggttctcagagatggtggttgga 24177224  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 13735356 - 13735438
Alignment:
Q  436 ctttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtat 518  Q
    ||||||||| | |||||||||||| |||| |  ||||| || |||||||||||||||| | | |||||||| |||||| ||||    
T  13735356 ctttggtggttaaaagctaataataccacttttgtgtacggctcttagagatggtggtcgaaccctttactgtgtttgggtat 13735438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 519
Target Start/End: Original strand, 5909533 - 5909614
Alignment:
Q  438 ttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 519  Q
    ||||||||||||||| ||||| ||||| |  ||||| | |||| |||||||||||| ||| |||||  |||||||| |||||    
T  5909533 ttggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatc 5909614  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 513
Target Start/End: Complemental strand, 15792832 - 15792758
Alignment:
Q  439 tggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttg 513  Q
    |||||||| || ||||||||||| || |  ||||| |||||| |||||||||||||||| || ||| ||||||||    
T  15792832 tggtggcttaaggctaataatgctacttttgtgtacggttctcagagatggtggttggaccccttagtttgtttg 15792758  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 4964003 - 4963942
Alignment:
Q  469 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 530  Q
    ||||| |||||| |||||||||||| ||| |||||||||||| || |||||||  |||||||    
T  4964003 gtgtacggttctcagagatggtggtcggaccctttactttgtctgggtatcgactgaccttt 4963942  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 510
Target Start/End: Original strand, 5789950 - 5790023
Alignment:
Q  437 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgt 510  Q
    |||||||| | |||||||||||  |||| |  ||||| || ||| |||||||||||||||| ||||||||||||    
T  5789950 tttggtggttaaaagctaataacaccacttttgtgtacggctctgagagatggtggttggaccctttactttgt 5790023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 533
Target Start/End: Complemental strand, 34829090 - 34828994
Alignment:
Q  437 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgacctttgct 533  Q
    |||||||||| ||||||||||| ||||| |   |||| | |||| | |||||||||| | | |||||| | |||||| |||||||| ||||||||||    
T  34829090 tttggtggcttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaaccctttattatgtttgagtatcgattgacctttgct 34828994  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 519
Target Start/End: Complemental strand, 31265892 - 31265814
Alignment:
Q  441 gtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatc 519  Q
    |||||| |||||| ||||| |||| |  ||||||| |||| | |||||||||| ||| ||||||||||||||| |||||    
T  31265892 gtggctaaaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatc 31265814  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 44941283 - 44941349
Alignment:
Q  437 tttggtggctgaaagctaataatgccacatcagtgtatggttcttagagatggtggttggatccttt 503  Q
    |||||||||| |||||||| |||| |||||  ||||| |||||  |||||||||||| |||||||||    
T  44941283 tttggtggctaaaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatccttt 44941349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 6823053 - 6822992
Alignment:
Q  469 gtgtatggttcttagagatggtggttggatcctttactttgtttgtgtatcgatcgaccttt 530  Q
    ||||| |||||| | |||||||||| | | ||||||||||||||| |||||||| |||||||    
T  6823053 gtgtacggttctcaaagatggtggtcgaaccctttactttgtttgggtatcgattgaccttt 6822992  T

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