View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5782_low_9 (Length: 493)
Name: NF5782_low_9
Description: NF5782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5782_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 24 - 475
Target Start/End: Complemental strand, 19592907 - 19592459
Alignment:
| Q |
24 |
aatatttattccatcgaacactatctacaccgcagctaccatcccaatccaatgcaccattttcaacgcaacgaccacaaccaccatatcaatttattgc |
123 |
Q |
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| T |
19592907 |
aatatttattccatcgaacactatctacaccgcagctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatcaatttattgc |
19592808 |
T |
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| Q |
124 |
accatcatattcgtcgcagcagccaccacgaccaccatatcaatttagtcgaccatcattttcgtcgcaaccaccacaacaagcacactattcttttcaa |
223 |
Q |
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| T |
19592807 |
accatcatattcgtcgcagcagccaccacgaccaccatatcattttagtcgaccatcatttttgtcgcaaccaccaca---------ctattcttttcaa |
19592717 |
T |
|
| Q |
224 |
cgatcttcttcatcgcagccagcacgaccaccatattattctattacaccatattcgtcggaaccaccacgatcatcccattctaatatggaacaaagtt |
323 |
Q |
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| T |
19592716 |
cgatcttcttcatcgcagccagcacgaccaccatattattctattacaccatattcgtcggaaacaccacgatcatcccattctaatatggaacaaagtt |
19592617 |
T |
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| Q |
324 |
tcatcccaccacgatatcgctcttcaatgtggataacaccatctagatcacg------atcaccatctgatccatcatattcatcgaaggcatcaaatat |
417 |
Q |
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| T |
19592616 |
tcatcccaccacgatatcgctcttcaacgtggataacaccatctagatcacgatcaacatcaccatctgatgcatcatattcatcgaaggcatcaaatat |
19592517 |
T |
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| Q |
418 |
aaaagattacatctgtatagccttagccgtaacttcttgtgttatatatatgagttac |
475 |
Q |
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| T |
19592516 |
aaaagattacatctgtatagccttagccgtaacttcttgtgttatatatatgagttac |
19592459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 19597480 - 19597423
Alignment:
| Q |
57 |
agctaccatcccaatccaatgcaccattttcaacgcaacgaccacaaccaccatatca |
114 |
Q |
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|||||||||| ||||||||| |||||| |||| |||| | ||||| |||||||||||| |
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| T |
19597480 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
19597423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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