View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5783-Insertion-1 (Length: 606)
Name: NF5783-Insertion-1
Description: NF5783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5783-Insertion-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 606
Target Start/End: Original strand, 42528298 - 42528901
Alignment:
| Q |
7 |
aatgtgctcttgacttttctagggattggtatctggctctcggccacaaatatcctagattcaccccnnnnnnnntcagaaaactaacgattaaatgtct |
106 |
Q |
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| T |
42528298 |
aatgtgctcttgacttttctagggattggtatctggctctcggccacaaatatcctagattcaccc-gaacaaaatcagaaaactaacgattaaatgtct |
42528396 |
T |
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| Q |
107 |
cannnnnnnnn-----ctttaaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaa |
201 |
Q |
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| T |
42528397 |
cattttttttcttcttctttaaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaa |
42528496 |
T |
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| Q |
202 |
tattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaact |
301 |
Q |
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| T |
42528497 |
tattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaact |
42528596 |
T |
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| Q |
302 |
atgnnnnnnnnnnnnnnnnncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaagatattttgaaccattttttattgtgtcggaaca |
401 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42528597 |
atgaaaattaaaataaaaaacatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaagatattttgaaccattttttattgtgtcggaaca |
42528696 |
T |
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| Q |
402 |
taacatattccnnnnnnngatgaattataatccataacagaagatttaggacaagtgatgttcctagcctcgtgtctaaaggggcacctgagttctgcac |
501 |
Q |
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| T |
42528697 |
taacatattcctttttttgatgaattataatccataacagaagatttaggacaagtgatgttcctagcctcgtgtctaaaggggcacctgaattctgcac |
42528796 |
T |
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| Q |
502 |
tgtgtacattatttccaaaggaaaaatccaatctgtaaaaactgctacttctccattaacattgaaagccatgccgcataatgcattgcagcctccacag |
601 |
Q |
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| T |
42528797 |
tgtgtacattatttccaaaggaaaaatccaatctgtaaaaactgctacttctccattaacattgaaagccatgccgcgtaatgcattgcagcctccacag |
42528896 |
T |
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| Q |
602 |
cagcc |
606 |
Q |
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| T |
42528897 |
cagcc |
42528901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 7 - 594
Target Start/End: Original strand, 42520125 - 42520715
Alignment:
| Q |
7 |
aatgtgctcttgacttttctagggattggtatctggctctcggccacaaatatcctagattcaccccnnnnnnnntcagaaaactaacgattaaatgtct |
106 |
Q |
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| T |
42520125 |
aatgtgctcttgacttttctagggattggtatctggctctcggccacaaacatcctagattcacccgaaaaaaaatcagaaaactaacgattaaatgtcg |
42520224 |
T |
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| Q |
107 |
cannnnnnnnn-ctttaaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatatt |
205 |
Q |
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| T |
42520225 |
catttttttcttctttaaatatgatagatactatgcaaggaagttttattggaggacatggatgtatctaaggcaatcatagaaggtattagagaatatt |
42520324 |
T |
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| Q |
206 |
ccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatgn |
305 |
Q |
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| T |
42520325 |
ccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattctgcacttcttaccaaatattagtccaaccaactatga |
42520424 |
T |
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| Q |
306 |
nnnnnnnnnnnnnnnncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaagatattttgaaccattttttattgtgtcggaacataac |
405 |
Q |
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| T |
42520425 |
aaaataaaataaaaaacatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaagatattttgaacc-ttttttattgtgtcggaacataac |
42520523 |
T |
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| Q |
406 |
atattccnnnnnnngatgaattataatccataacagaagatttaggacaagtgatgttcctagcctcgtgtctaaaggggcacctgagttctgcactgtg |
505 |
Q |
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||||||| |||||||| | || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
42520524 |
atattccattttttgatgaatttttattcatgacagaagatttaggacaagtgatgttcctagccttgtgtctaaaggggcacctgagttctgcaccgtg |
42520623 |
T |
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| Q |
506 |
tacattatttccaaaggaaaaatccaatctgtaaaaactgctacttctccattaacattgaaagccatgccgc---ataatgcattgcagcc |
594 |
Q |
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| T |
42520624 |
tacattatttccaaaggaaaaatccaatctgttaaaactgctacttctccattaacaccgaaagccatgccgcgtaacaatgcattgcagcc |
42520715 |
T |
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