View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5783-Insertion-3 (Length: 316)

Name: NF5783-Insertion-3
Description: NF5783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5783-Insertion-3
NF5783-Insertion-3
[»] chr1 (11 HSPs)
chr1 (32-182)||(8246428-8246578)
chr1 (173-221)||(2257731-2257779)
chr1 (185-221)||(48336475-48336511)
chr1 (190-220)||(22331369-22331399)
chr1 (192-221)||(49314368-49314397)
chr1 (185-221)||(10385425-10385461)
chr1 (185-221)||(24158648-24158684)
chr1 (185-221)||(26910430-26910466)
chr1 (185-221)||(30414873-30414909)
chr1 (185-221)||(46903479-46903515)
chr1 (185-221)||(49189245-49189281)
[»] chr4 (7 HSPs)
chr4 (183-221)||(26442427-26442465)
chr4 (185-221)||(41170771-41170807)
chr4 (190-220)||(31318756-31318786)
chr4 (185-221)||(1868919-1868955)
chr4 (185-221)||(35037607-35037643)
chr4 (185-221)||(37022270-37022306)
chr4 (185-221)||(45418065-45418101)
[»] chr8 (9 HSPs)
chr8 (190-221)||(5742694-5742725)
chr8 (185-220)||(28156201-28156236)
chr8 (184-220)||(3893436-3893472)
chr8 (185-221)||(13924020-13924056)
chr8 (185-221)||(18411332-18411368)
chr8 (185-221)||(22203252-22203288)
chr8 (185-221)||(25430655-25430691)
chr8 (185-217)||(32674273-32674305)
chr8 (185-221)||(35701864-35701900)
[»] chr7 (6 HSPs)
chr7 (185-220)||(640390-640425)
chr7 (184-214)||(33223573-33223603)
chr7 (187-221)||(45335862-45335896)
chr7 (184-221)||(48639420-48639457)
chr7 (185-221)||(28548258-28548294)
chr7 (185-221)||(48522154-48522190)
[»] chr3 (6 HSPs)
chr3 (190-221)||(38471645-38471676)
chr3 (187-221)||(17118397-17118431)
chr3 (185-221)||(29846917-29846953)
chr3 (189-221)||(40478324-40478356)
chr3 (185-217)||(50025739-50025771)
chr3 (185-213)||(50745367-50745395)
[»] chr2 (9 HSPs)
chr2 (190-221)||(24727429-24727460)
chr2 (184-221)||(305009-305046)
chr2 (185-221)||(11828846-11828882)
chr2 (185-221)||(12208440-12208476)
chr2 (185-213)||(16447291-16447319)
chr2 (185-221)||(27329135-27329171)
chr2 (185-221)||(30339991-30340027)
chr2 (185-221)||(30413763-30413799)
chr2 (185-221)||(40721769-40721805)
[»] scaffold0651 (1 HSPs)
scaffold0651 (190-220)||(4884-4914)
[»] scaffold0286 (1 HSPs)
scaffold0286 (185-221)||(17047-17083)
[»] chr6 (3 HSPs)
chr6 (185-221)||(2165326-2165362)
chr6 (185-221)||(2176959-2176995)
chr6 (185-221)||(28965877-28965913)
[»] chr5 (7 HSPs)
chr5 (185-221)||(3031832-3031868)
chr5 (188-220)||(8761646-8761678)
chr5 (185-221)||(12203156-12203192)
chr5 (185-221)||(14523001-14523037)
chr5 (185-221)||(18729326-18729362)
chr5 (185-221)||(29765828-29765864)
chr5 (185-221)||(39032641-39032677)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 8246428 - 8246578
Alignment:
Q  32 taaatgtgaaaagacaagagataaggtatcatgccccacggtatcatgccaaaagaatgtagattctccacattgcctacctttttctttgcataatcca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8246428 taaatgtgaaaagacaagagataaggtatcatgccccacggtatcatgccaaaagaatgtagattctccacactgcctacctttttctttgcataatcca 8246527  T
Q  132 taaaccaatcttggttgctgaaaccttccctagattacacacttctttcta 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8246528 taaaccaatcttggttgctgaaaccttccctagattacacacttctttcta 8246578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2257779 - 2257731
Alignment:
Q  173 cttctttctatgaagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  2257779 cttctttcttagaagaaaaatgatatttgtacaaccattttgctacaac 2257731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 48336511 - 48336475
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||||||||||||||||||||||||||||| ||||||    
T  48336511 aagaaaaatgatatttgtacaaccattttgatacaac 48336475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 22331369 - 22331399
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaa 220  Q
    |||||||||||||||||||||||||||||||    
T  22331369 aaatgatatttgtacaaccattttggtacaa 22331399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 49314368 - 49314397
Alignment:
Q  192 atgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||||||    
T  49314368 atgatatttgtacaaccattttggtacaac 49314397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 10385425 - 10385461
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  10385425 aagagaaatgatatttgtacaaccattttgctacaac 10385461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 24158648 - 24158684
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  24158648 aagagaaatgatatttgtacaaccatttcggtacaac 24158684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 26910430 - 26910466
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||||| |||||    
T  26910430 aagagaaatgatatttgtacaaccattttggcacaac 26910466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 30414873 - 30414909
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  30414873 aagagaaatgatatttgtacaaccatttttgtacaac 30414909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 46903479 - 46903515
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  46903479 aagagaaatgatatttgtacaaccattttgatacaac 46903515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 49189281 - 49189245
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  49189281 aagagaaatgatatttgtacaaccattttgctacaac 49189245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 26442465 - 26442427
Alignment:
Q  183 tgaagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  26442465 tgaagagaaatgatatttgtacaaccattttggtacaac 26442427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 41170771 - 41170807
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||||||||||    
T  41170771 aagataaatgatatttgtacaaccattttggtacaac 41170807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Original strand, 31318756 - 31318786
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaa 220  Q
    |||||||||||||||||||||||||||||||    
T  31318756 aaatgatatttgtacaaccattttggtacaa 31318786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 1868955 - 1868919
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  1868955 aagagaaatgatatttgtacaaccatttttgtacaac 1868919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 35037607 - 35037643
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  35037607 aagagaaatgatatttgtacaaccattttgatacaac 35037643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 37022270 - 37022306
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  37022270 aagagaaatgatatttgtacaaccattttgatacaac 37022306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 45418065 - 45418101
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||| |||||||||||||||||    
T  45418065 aagagaaatgatatttgtataaccattttggtacaac 45418101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 221
Target Start/End: Complemental strand, 5742725 - 5742694
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||||||||    
T  5742725 aaatgatatttgtacaaccattttggtacaac 5742694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 28156201 - 28156236
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaa 220  Q
    |||| |||||||||||||||||||||||||||||||    
T  28156201 aagagaaatgatatttgtacaaccattttggtacaa 28156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 3893472 - 3893436
Alignment:
Q  184 gaagaaaaatgatatttgtacaaccattttggtacaa 220  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  3893472 gaagataaatgatatttgtacaactattttggtacaa 3893436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 13924020 - 13924056
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  13924020 aagagaaatgatatttgtacaaccatttttgtacaac 13924056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 18411368 - 18411332
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||| |||||||||||||    
T  18411368 aagataaatgatatttgtacaacaattttggtacaac 18411332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 22203288 - 22203252
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  22203288 aagagaaatgatatttgtacaaccatttttgtacaac 22203252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 25430655 - 25430691
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  25430655 aagagaaatgatatttgtacaaccatttttgtacaac 25430691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 32674305 - 32674273
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggta 217  Q
    |||| ||||||||||||||||||||||||||||    
T  32674305 aagagaaatgatatttgtacaaccattttggta 32674273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 35701900 - 35701864
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  35701900 aagagaaatgatatttgtacaaccatttttgtacaac 35701864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 640390 - 640425
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaa 220  Q
    ||||||||||||||||||||||||||||| ||||||    
T  640390 aagaaaaatgatatttgtacaaccatttttgtacaa 640425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 33223603 - 33223573
Alignment:
Q  184 gaagaaaaatgatatttgtacaaccattttg 214  Q
    |||||||||||||||||||||||||||||||    
T  33223603 gaagaaaaatgatatttgtacaaccattttg 33223573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 45335862 - 45335896
Alignment:
Q  187 gaaaaatgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||| |||||||    
T  45335862 gaaaaatgatatttgtacaaccatttttgtacaac 45335896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 48639457 - 48639420
Alignment:
Q  184 gaagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  48639457 gaagagaaatgatatttgtacaaccatttttgtacaac 48639420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 28548294 - 28548258
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||| |||||||||||||    
T  28548294 aagagaaatgatatttgtacaactattttggtacaac 28548258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 48522154 - 48522190
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  48522154 aagagaaatgatatttgtacaaccatttttgtacaac 48522190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 38471645 - 38471676
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||||||||    
T  38471645 aaatgatatttgtacaaccattttggtacaac 38471676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 17118397 - 17118431
Alignment:
Q  187 gaaaaatgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||| |||||||    
T  17118397 gaaaaatgatatttgtacaaccatttttgtacaac 17118431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 29846953 - 29846917
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29846953 aagagaaatgatatttgtacaaccatttttgtacaac 29846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 40478356 - 40478324
Alignment:
Q  189 aaaatgatatttgtacaaccattttggtacaac 221  Q
    |||||||||||||||||||||||||| ||||||    
T  40478356 aaaatgatatttgtacaaccattttgctacaac 40478324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 50025771 - 50025739
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggta 217  Q
    |||| ||||||||||||||||||||||||||||    
T  50025771 aagagaaatgatatttgtacaaccattttggta 50025739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Original strand, 50745367 - 50745395
Alignment:
Q  185 aagaaaaatgatatttgtacaaccatttt 213  Q
    |||||||||||||||||||||||||||||    
T  50745367 aagaaaaatgatatttgtacaaccatttt 50745395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 221
Target Start/End: Original strand, 24727429 - 24727460
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaac 221  Q
    ||||||||||||||||||||||||||||||||    
T  24727429 aaatgatatttgtacaaccattttggtacaac 24727460  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 305046 - 305009
Alignment:
Q  184 gaagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  305046 gaagagaaattatatttgtacaaccattttggtacaac 305009  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 11828882 - 11828846
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  11828882 aagataaatgatatttgtacaaccatttttgtacaac 11828846  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 12208440 - 12208476
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  12208440 aagagaaatgatatttgtacaaccatttttgtacaac 12208476  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 16447319 - 16447291
Alignment:
Q  185 aagaaaaatgatatttgtacaaccatttt 213  Q
    |||||||||||||||||||||||||||||    
T  16447319 aagaaaaatgatatttgtacaaccatttt 16447291  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 27329171 - 27329135
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  27329171 aagagaaatgatatttgtacaatcattttggtacaac 27329135  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 30339991 - 30340027
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  30339991 aagagaaatgatatttgtacaaccatttttgtacaac 30340027  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 30413799 - 30413763
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  30413799 aagagaaatgatatttgtacaaccattttgctacaac 30413763  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 40721769 - 40721805
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||| |||||||||||||||    
T  40721769 aagagaaatgatatttgtacagccattttggtacaac 40721805  T

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Target: scaffold0651 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 220
Target Start/End: Complemental strand, 4914 - 4884
Alignment:
Q  190 aaatgatatttgtacaaccattttggtacaa 220  Q
    |||||||||||||||||||||||||||||||    
T  4914 aaatgatatttgtacaaccattttggtacaa 4884  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 17047 - 17083
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  17047 aagagaaatgatatttgtacaaccatttttgtacaac 17083  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 2165362 - 2165326
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  2165362 aagagaaatgatatttgtacaaccatttttgtacaac 2165326  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 2176995 - 2176959
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  2176995 aagagaaatgatatttgtacaaccatttttgtacaac 2176959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 28965913 - 28965877
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  28965913 aagagaaatgatatttgtacaaccattttgttacaac 28965877  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 3031832 - 3031868
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  3031832 aagagaaatgatatttgtacaaccatttttgtacaac 3031868  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 8761646 - 8761678
Alignment:
Q  188 aaaaatgatatttgtacaaccattttggtacaa 220  Q
    ||||||||||||||||||| |||||||||||||    
T  8761646 aaaaatgatatttgtacaatcattttggtacaa 8761678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 12203156 - 12203192
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  12203156 aagagaaatgatatttgtacaaccatttttgtacaac 12203192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 14523037 - 14523001
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  14523037 aagagaaatgatatttgtacaaccatttttgtacaac 14523001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 18729362 - 18729326
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  18729362 aagagaaatgatatttgtacaaccatttttgtacaac 18729326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 29765828 - 29765864
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29765828 aagagaaatgatatttgtacaaccattttagtacaac 29765864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 39032677 - 39032641
Alignment:
Q  185 aagaaaaatgatatttgtacaaccattttggtacaac 221  Q
    |||| |||||||||||||||||||||||| |||||||    
T  39032677 aagagaaatgatatttgtacaaccatttttgtacaac 39032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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