View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5783_low_1 (Length: 443)
Name: NF5783_low_1
Description: NF5783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5783_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 24401755 - 24401336
Alignment:
| Q |
16 |
caaacttcccataacttttccattttctgcaagtgcaaccaaagtcctatgaagtatgaatatttatagttgcataatatcgattttgggatactaatan |
115 |
Q |
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| T |
24401755 |
caaacttcccataacttttccattttctgcaagtgcaaccaaagtcctatgaagtatgaatatttatagttgcataatatcgattttgggatactaatat |
24401656 |
T |
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| Q |
116 |
nnnnnnccgtcgtgatgttgctttaactatagaaccaattaagcaatatctttatttaaatgtatatctttagatctggttcatgattcatgacagttta |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401655 |
ttttttacgtcatgatgttgctttaactatagaaccaattaagcaatatctttatttaaatgtatatctttagatctggttcatgattcatgacagttta |
24401556 |
T |
|
| Q |
216 |
tattcaggaactaaattgaccgatctaaaaatacttatgcgatcaaactgaatatctataatttagggagtgcttgtctctatgacattgtttgatttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24401555 |
tattcaggaactaaattgaccgatctaaaaatacttatgcgatcaaactgaatatctataatttagggagtgtttgtctctatgacattgtttgatttat |
24401456 |
T |
|
| Q |
316 |
gtagctaactcagttagttaaaaaagggtttggttgttatatggtgttgctttaattatcaagaggcttgaaattaaaaaataagcataatctaaaatct |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24401455 |
gtagctaactcagttagttaaaaaagggtttggttgttatatggtgttgctttaattatcaagaggcttgaaattaaaaaataagcataatctgaaattg |
24401356 |
T |
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| Q |
416 |
ccagaaattgagtgatgatg |
435 |
Q |
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| T |
24401355 |
acagaaattgagtgaagatg |
24401336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 223 - 400
Target Start/End: Complemental strand, 24378728 - 24378543
Alignment:
| Q |
223 |
gaactaaattgaccgatctaaaaatacttatgcgatcaaactgaatatctataatttaggga--------gtgcttgtctctatgacattgtttgattta |
314 |
Q |
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|||||||||||||| ||| ||||| |||||| |||||||||| || ||||||||||||||| ||| || ||||| |||||||||||||| | |
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| T |
24378728 |
gaactaaattgacctatccaaaaagacttatacgatcaaactcaaggtctataatttagggactgactcagtgtttcactctacgacattgtttgattaa |
24378629 |
T |
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| Q |
315 |
tgtagctaactcagttagttaaaaaagggtttggttgttatatggtgttgctttaattatcaagaggcttgaaattaaaaaataag |
400 |
Q |
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||||||| |||| |||| |||||||||||||||||||||||| || ||| |||| ||||||||| ||| ||||||| ||||||| |
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| T |
24378628 |
tgtagctgactcgtttagcgaaaaaagggtttggttgttatatgatgctgccttaactatcaagagacttaaaattaagaaataag |
24378543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 24378961 - 24378901
Alignment:
| Q |
16 |
caaacttcccataacttttccattttctgcaagtgcaaccaaagtcctatgaagtatgaat |
76 |
Q |
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|||||||||||||| | ||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
24378961 |
caaacttcccataattcttccattttctgcaagtgcaacccaattcctatgaagtgtgaat |
24378901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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