View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5783_low_3 (Length: 378)
Name: NF5783_low_3
Description: NF5783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5783_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 111 - 357
Target Start/End: Complemental strand, 8300884 - 8300638
Alignment:
| Q |
111 |
tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggt |
210 |
Q |
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| T |
8300884 |
tgttggctgagctaattaaatttatggaaaaagagaaacaattcgagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggt |
8300785 |
T |
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| Q |
211 |
ggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaatta |
310 |
Q |
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| T |
8300784 |
ggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatggaggatagagtggaatta |
8300685 |
T |
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| Q |
311 |
aaagggaactcagaaagtatcagagttgaaatgcaaactatggagta |
357 |
Q |
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| T |
8300684 |
aaagggaactcagaaagtatcagagttgaaatgcaaactatggagta |
8300638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 8297306 - 8297062
Alignment:
| Q |
111 |
tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggt |
210 |
Q |
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| T |
8297306 |
tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggt |
8297207 |
T |
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| Q |
211 |
ggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaatta |
310 |
Q |
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| T |
8297206 |
ggctgtgatggataattctttggtgtttattagatatttcaaaaacttgatgctgaattttctcgagtctatcaagtctatggaggatagaatggaatta |
8297107 |
T |
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| Q |
311 |
aaagggaactcagaaagtatcagagttgaaatgcaaactatggag |
355 |
Q |
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| T |
8297106 |
aaagggaacttagaaagtatcagagttgaaatgcaaactatggag |
8297062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 111 - 361
Target Start/End: Original strand, 18279341 - 18279591
Alignment:
| Q |
111 |
tgttggctgagctaaatacatttatggaaaaagcgaaacaattggagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggt |
210 |
Q |
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|||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||||||||| |||||| | | ||||||||||||| || || |
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| T |
18279341 |
tgttggctgagctaaataaatttatggaaaaagataatcaattggagaagaaggttgaaaatctggataatcttgatgtacaatggatgataatcaatgt |
18279440 |
T |
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| Q |
211 |
ggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaatta |
310 |
Q |
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| T |
18279441 |
ggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctgaattttctcgagtctattaagtctttggaggatagaatggaatta |
18279540 |
T |
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| Q |
311 |
aaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataat |
361 |
Q |
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| T |
18279541 |
aaagggaacttagaaagtgtcaaagttgaaaagcaaactatggaggataat |
18279591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 191 - 360
Target Start/End: Complemental strand, 1145428 - 1145259
Alignment:
| Q |
191 |
aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta |
290 |
Q |
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|||||||||||||| || |||| | ||| |||||| |||| |||||||||| ||| |||| |||||| ||||||||||| ||||||||||||| | |
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| T |
1145428 |
aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc |
1145329 |
T |
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| Q |
291 |
tgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataa |
360 |
Q |
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| T |
1145328 |
tggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataa |
1145259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 21120553 - 21120585
Alignment:
| Q |
323 |
gaaagtatcagagttgaaatgcaaactatggag |
355 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
21120553 |
gaaagtctcagagttgaaatgcaaactatggag |
21120585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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