View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5783_low_4 (Length: 377)
Name: NF5783_low_4
Description: NF5783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5783_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 36287838 - 36288177
Alignment:
| Q |
17 |
accaaacttatgcgggttatatcatattcgatcgtgttcaactttgatcgtcaaattcgtagatcgacgcacacccatgaacaccccacaaaggaataa- |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
36287838 |
accaaacttatgcgggttatatcatattcgatcgtgttcaactttgatcgtcaaattcgtggatcgacccacacccatgaacaccccacaaaggaaaaaa |
36287937 |
T |
|
| Q |
116 |
tgatccaacttttgaaattaagcacttaatttttctttttaaatagtgaaaattgatggcgcccaatagagcattattatgctccaaaacataaacacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36287938 |
tgatccaacttttgaaattaagcacttaatttttctttttaaatagtgaaaattgatggcgcccaatagagcattattatgctccaaaacataaacacaa |
36288037 |
T |
|
| Q |
216 |
atacaaacacttgtgtgttggagtgtaccccacatgagtcagaaagacaggagttttatgcagctttcattcactgcccatttctctctcgtgaagggga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288038 |
atacaaacacttgtgtgttggagtgtaccccacatgagtcagaaagacaggagttttatgcagctttcattcactgcccatttctctctcgtgaagggga |
36288137 |
T |
|
| Q |
316 |
tgagagtgcctgcccactatttcctttccttcccaataca |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288138 |
tgagagtgcctgcccactatttcctttccttcccaataca |
36288177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 47883517 - 47883456
Alignment:
| Q |
59 |
tttgatcgtcaaattcgtagatcgacgcacacccatgaaca-ccccacaaaggaataatgat |
119 |
Q |
| |
|
||||||||||||||| | || ||||| |||||||||||||| || || |||||||||||||| |
|
|
| T |
47883517 |
tttgatcgtcaaatttgcaggtcgacacacacccatgaacatcctcaaaaaggaataatgat |
47883456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University