View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784-Insertion-1 (Length: 1064)
Name: NF5784-Insertion-1
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 336 - 1050
Target Start/End: Complemental strand, 53049690 - 53048973
Alignment:
| Q |
336 |
gacaagctcaccaacaacccttgttgccctacaaaattaatacgaagcagctatgaacaagaaataatcctatacatcaaaccactgcaaggaaaaagta |
435 |
Q |
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| T |
53049690 |
gacaagctcaccaacaacccttgttgccctacaaaattaatacgaagcagctatgaacaagaaataatcctatacatcaaaccactgcaaggaaaaagta |
53049591 |
T |
|
| Q |
436 |
tgtggttaagtatacttgacttagaacaactgaactgccattttgagtttgttctgtttccattttggcaacttgtaaaattcactcctagtcattccca |
535 |
Q |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53049590 |
tgtggttaagtatacttgactcagaacaactgaacagccattttgagtttgttctgtttccattttggcaacttgtaaaattcactcctagtcattccca |
53049491 |
T |
|
| Q |
536 |
gtctctcttggaattcctcaggtgatagataagcctgcatgccccaagctcaaacaagtcagaatgaaaatgaaatcacgatttaattatatcatttaac |
635 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53049490 |
gtctctcttggaattcctcaggtgatagataagcctgcatgccccaagctcaaacaagtcagaatgaaaatgaaatcacaatttaattatatcatttaac |
53049391 |
T |
|
| Q |
636 |
ctgtaaagaataaagtaaagnnnnnnnnnngacaaggttatatgttgacattgtcataatagtatacctctcgtttagtcacgtcaatgtctggcatagg |
735 |
Q |
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| T |
53049390 |
ctgtaaagaataaagtaaagaaaaaaaaaagacaaggttatatgttgacattgtcatgatagtatacctctcgtttagtcacgtcaatgtctggcatagg |
53049291 |
T |
|
| Q |
736 |
atctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggttcaccctcgttcacatcttcctgtatagtaagagat |
835 |
Q |
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| T |
53049290 |
atctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggttcaccctcgttcacatcttcctgtatagtaagagat |
53049191 |
T |
|
| Q |
836 |
tcttctcggctgcccgtagaattctcattgtcactatttgtctcagggtttgatttggaagtatctgtgctcccatcacatcatagcagctcagagaaga |
935 |
Q |
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| T |
53049190 |
tcttctcggctgcccgtagaattctcattgtcactgtttgtctcagggtttgatttggaagtatctgtgctcccatcacatcatagcagctcagagaaga |
53049091 |
T |
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| Q |
936 |
gaatacgcattttacaaaagaacaaattctaacatataataaaatcacaatgaactcgtctactcatacctttaagtga-cgagg-atc-atttttctcg |
1032 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
53049090 |
gaatacgcattttacaaaagaacaaattctaacatataataaaatcacaatgaactcgtctactcatacctttaagtgaccgaggaatcaatttttctcg |
53048991 |
T |
|
| Q |
1033 |
tgctgatggtggttcaaa |
1050 |
Q |
| |
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| T |
53048990 |
tgctgatggtggttcaaa |
53048973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 53050021 - 53049736
Alignment:
| Q |
8 |
atttttaaattggagttgcaaaagggacttgcatgtcggtgtaagactattttacattgacagtgcatgtccattaaactcacgcttgnnnnnnnnnnnn |
107 |
Q |
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| T |
53050021 |
atttttaaattggagttgcaaaagggacttgcatgtcggtgtaagactattttacattgacagtgcatgtccattaaactcacgcttgcacacacgcgca |
53049922 |
T |
|
| Q |
108 |
nnnnnnnntatatata--ccaagaaaatgttagcatgaaacacaaggaacttgaagaa-aattttaaagaatattatttaatttccaacataaataatgt |
204 |
Q |
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| T |
53049921 |
cacacacatatatatataccaagaaaatgttagcatgaaacacaaggaacttgaagaataattttaaagaatattatttaatttccaaaataaataatgt |
53049822 |
T |
|
| Q |
205 |
gttgagtggcttttacactctgctgtacaaacttcataactcaactatcaatacaaccttcctattgcaagctcaattgcttcacc |
290 |
Q |
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| T |
53049821 |
gttgagtggcttttacactctgctgtacaaacttcataactcaactatcaatacaaccttcctattgcaagctcaattgcttcacc |
53049736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 700 - 838
Target Start/End: Original strand, 15956758 - 15956896
Alignment:
| Q |
700 |
tacctctcgtttagtcacgtcaatgtctggcataggatctgtagaatctgttttaacactttcatatgggtaaactggaagaccttcattatcttcaggt |
799 |
Q |
| |
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|||||||| |||||| || ||||||||||||| |||||||||||| | |||||| | |||||||||||||| | |||||||| | |||||||| | |
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| T |
15956758 |
tacctctcttttagttacatcaatgtctggcacaggatctgtagatgttattttaaggcgttcatatgggtaaatcaggagaccttcctcatcttcagct |
15956857 |
T |
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| Q |
800 |
tcaccctcgttcacatcttcctgtatagtaagagattct |
838 |
Q |
| |
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|| || || ||||||||||| | ||| |||||||||||| |
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| T |
15956858 |
tcgccttctttcacatcttcttctatggtaagagattct |
15956896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 458 - 515
Target Start/End: Original strand, 15956503 - 15956560
Alignment:
| Q |
458 |
agaacaactgaactgccattttgagtttgttctgtttccattttggcaacttgtaaaa |
515 |
Q |
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|||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
15956503 |
agaataactgaatagccattttgagtttgttttgtttccatttgggcaacttgtaaaa |
15956560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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