View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5784-Insertion-2 (Length: 1026)
Name: NF5784-Insertion-2
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784-Insertion-2 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] scaffold0771 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 874; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 874; E-Value: 0
Query Start/End: Original strand, 8 - 1026
Target Start/End: Original strand, 20899880 - 20900910
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899880 |
atagttactatttcttgacaattttctttacctttttgtggttagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
20899979 |
T |
|
| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaattc------aatgtgccttatgtagtgatattccatcagagttaattttgtttatgatcatgt |
201 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20899980 |
ctctccctcgacgagaa-tatttaccaatattcttaattcttttggaatgtgccttatgtattgatattccatcagagttaattttgtttatgatcatgt |
20900078 |
T |
|
| Q |
202 |
tttaggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgaggatagttgttc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900079 |
tttaggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgaggatagttgttc |
20900178 |
T |
|
| Q |
302 |
ttctgatggtagtggtagcgattcttcgtctaacagaggtcatctaagtcgacggatgcgaaaagaaggtatgcctgtcagtggcagtacttaagtttta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||| |
|
|
| T |
20900179 |
ttctgatggtagtggtagcgattcttcgtctaacagaggtcatctaagtcgacggatgcgaaaagaaggtatgactgttagcggcagtactgaagtttta |
20900278 |
T |
|
| Q |
402 |
aagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttctaatattt-----caaatttctttgaatatcattgaat |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20900279 |
aagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttcttctaatatttaaactcaaatttctttgaatatcattgaat |
20900378 |
T |
|
| Q |
497 |
gttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaacaagcagctctctttgatgaggatttggcagtgtaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
20900379 |
gttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaacaagcacctctctttgatgaggatttgacagtgtaa |
20900478 |
T |
|
| Q |
597 |
gtctatataactatttttgta-cggacttggactttcgccttaaaaccgtctcatttcattgtcgttttacatttattttagggagggcatccttgatgc |
695 |
Q |
| |
|
||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900479 |
gtctatataaccatttttgtaacagacttggattttcgccttaaaaccgtctcatttcattgtcgttttacatttattttagggagggcatccttgatgc |
20900578 |
T |
|
| Q |
696 |
atttgaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttat |
795 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900579 |
atttaaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctctatttgttattttatgatctaagtttcttttgttat |
20900678 |
T |
|
| Q |
796 |
ttctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatg |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900679 |
ttctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatg |
20900778 |
T |
|
| Q |
896 |
ttaagtgtttaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgatt |
994 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20900779 |
ttaagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgatt |
20900878 |
T |
|
| Q |
995 |
aaaat-agatttgcttcttggtcatatggactc |
1026 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
20900879 |
aaaataagatttgtttctt-gtcatatggactc |
20900910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 13949645 - 13950191
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13949645 |
atagttgctatttcttgacaattttctttacctttttatggtcagtgttggtgccgggtgctcccaactcctgtctgatatgcaggccttcaaggtcata |
13949744 |
T |
|
| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaattc------aatgtgccttatgtagtgatattccatcagagttaattttgtttatgatcatgt |
201 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
13949745 |
ctcttcctcgacgagaatactttaccgatattcttaattcttttggaatgtgccttatgtagtgacgttccattggagttaattttgcttatgatcatgt |
13949844 |
T |
|
| Q |
202 |
tttaggctgcaaatcccggttgtat--tttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgaggatagttgt |
299 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13949845 |
ttaaggctgcaaatcccggttgtatattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtacagaggatagttgt |
13949944 |
T |
|
| Q |
300 |
tcttctgatggtagtggtagcgattcttcgtctaacagaggtcatctaagtcgacggatgcgaaaagaaggtatgcctgtcagtggcagtacttaagttt |
399 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| | |
|
|
| T |
13949945 |
tcttctgatggtagtagtagcgagtcgtcgtctaacaaaggtcatctaagtcgacggatgcgaaaagaaggtatgcttgtcaatggcagtaccaaaggtc |
13950044 |
T |
|
| Q |
400 |
taaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttctaatatt-----tcaaatttctttgaatatcattga |
494 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13950045 |
tgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttctaatatttaaactcaaatttctttgaatatcattga |
13950144 |
T |
|
| Q |
495 |
atgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
541 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13950145 |
atgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
13950191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 797 - 1023
Target Start/End: Original strand, 13950234 - 13950460
Alignment:
| Q |
797 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
896 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
13950234 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
13950333 |
T |
|
| Q |
897 |
taagtgtttaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaa |
996 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
13950334 |
tcagtgattaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaa |
13950433 |
T |
|
| Q |
997 |
aata-gatttgcttcttggtcatatgga |
1023 |
Q |
| |
|
|||| |||||||||||| |||||||||| |
|
|
| T |
13950434 |
aatatgatttgcttctt-gtcatatgga |
13950460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 502 - 541
Target Start/End: Original strand, 13950199 - 13950238
Alignment:
| Q |
502 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
13950238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 1785 - 2331
Alignment:
| Q |
8 |
atagttactatttcatgacaattttctttacctttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtcata |
107 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1785 |
atagttgctatttcttgacaattttctttacctttttatggtcagtgttggtgccgggtgctcccaactcctgtctgatatgcaggccttcaaggtcata |
1884 |
T |
|
| Q |
108 |
ctctccctcgacgagaactttttaccaatattcttaattc------aatgtgccttatgtagtgatattccatcagagttaattttgtttatgatcatgt |
201 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||| |
|
|
| T |
1885 |
ctcttcctcgacgagaatactttaccgatattcttaattcttttggaatgtgccttatgtagtgacgttccattggagttaattttgcttatgatcatgt |
1984 |
T |
|
| Q |
202 |
tttaggctgcaaatcccggttgtat--tttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgaggatagttgt |
299 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1985 |
ttaaggctgcaaatcccggttgtatattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtacagaggatagttgt |
2084 |
T |
|
| Q |
300 |
tcttctgatggtagtggtagcgattcttcgtctaacagaggtcatctaagtcgacggatgcgaaaagaaggtatgcctgtcagtggcagtacttaagttt |
399 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| | |
|
|
| T |
2085 |
tcttctgatggtagtagtagcgagtcgtcgtctaacaaaggtcatctaagtcgacggatgcgaaaagaaggtatgcttgtcaatggcagtaccaaaggtc |
2184 |
T |
|
| Q |
400 |
taaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttctaatatt-----tcaaatttctttgaatatcattga |
494 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2185 |
tgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttctaatatttaaactcaaatttctttgaatatcattga |
2284 |
T |
|
| Q |
495 |
atgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
541 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2285 |
atgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
2331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 797 - 1023
Target Start/End: Original strand, 2374 - 2600
Alignment:
| Q |
797 |
tctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgt |
896 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || |
|
|
| T |
2374 |
tctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctga |
2473 |
T |
|
| Q |
897 |
taagtgtttaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaa |
996 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
|
|
| T |
2474 |
tcagtgattaattaatacaatgttaaatatagtctactgttaccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaa |
2573 |
T |
|
| Q |
997 |
aata-gatttgcttcttggtcatatgga |
1023 |
Q |
| |
|
|||| |||||||||||| |||||||||| |
|
|
| T |
2574 |
aatatgatttgcttctt-gtcatatgga |
2600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 502 - 541
Target Start/End: Original strand, 2339 - 2378
Alignment:
| Q |
502 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
2378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 499 - 598
Target Start/End: Original strand, 40702180 - 40702279
Alignment:
| Q |
499 |
tgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaacaagcagctctctttgatgaggatttggcagtgtaagt |
598 |
Q |
| |
|
||||| |||||||||| |||| |||||||||| ||||||||| |||||||| ||||| || || ||| |||| || ||||||||||||||||||||||| |
|
|
| T |
40702180 |
tgatgataggtaatttatggcatgaattgtgggcaacatctaaaccagtaccagctgttaagcaggcacctcttttcgatgaggatttggcagtgtaagt |
40702279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 661 - 765
Target Start/End: Original strand, 40702333 - 40702438
Alignment:
| Q |
661 |
ttttacatttattt-tagggagggcatccttgatgcatttgaggacattcagccagttgagctttttggacagctgtttgtttcactagtaagttctctc |
759 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| |||||||||||||||| || || ||||||||||||||||| ||||||| || ||||||||||| || |
|
|
| T |
40702333 |
ttttacattcatttgtagagagggcatcctccatgcatttgaggacatccacccttttgagctttttggacagttgtttgtctctttagtaagttctttc |
40702432 |
T |
|
| Q |
760 |
tatttg |
765 |
Q |
| |
|
| |||| |
|
|
| T |
40702433 |
tttttg |
40702438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 40700883 - 40700947
Alignment:
| Q |
41 |
ttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttcaaggtca |
105 |
Q |
| |
|
||||||||||||| ||||||| || ||||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
40700883 |
ttttgtggtcagtgttggtgctggctgctcgcaactgctctcagatatgcaggctttcaaggtca |
40700947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 40701051 - 40701139
Alignment:
| Q |
204 |
taggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgagga |
292 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || ||||| |||||| |||| |||||||||||||| || | |||||| |||| |||||| |
|
|
| T |
40701051 |
taggctgcgaatcctggatgtattttggaggattttgtaagatggcactcacctcctgattggacagacaatgaggctagtattgagga |
40701139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 40719150 - 40719207
Alignment:
| Q |
41 |
ttttgtggtcagttttggtgccgggtgctcccaactcctgtctgatatgcaggctttc |
98 |
Q |
| |
|
||||||||||||| |||||||| | ||||| ||||| || || ||||||||||||||| |
|
|
| T |
40719150 |
ttttgtggtcagtgttggtgcccgctgctcgcaactgctctcagatatgcaggctttc |
40719207 |
T |
|
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