View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784-Insertion-3 (Length: 962)
Name: NF5784-Insertion-3
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 464 - 962
Target Start/End: Complemental strand, 46535018 - 46534522
Alignment:
| Q |
464 |
attaaatctatcaagtaattgtttcaataaaataaaactcacatataacatattcgcattaattaggtttgaacgataaacttccaaatgctataatatt |
563 |
Q |
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| T |
46535018 |
attaaatctatcaagtaattgtttcaataaaataaaactcacatataacatattcgcattaattaggtttgaacgataaacttccaaatgctataatatt |
46534919 |
T |
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| Q |
564 |
gccatatgtttagtttttaagcctagaagtgtgatgaactggttataaattgcagggaatgttcaggagaatgataacaatatgtctctagacattctta |
663 |
Q |
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| T |
46534918 |
gccatatgtgtagtttttaagtctagaagtgtgatgaactggttataaattgcagggcatgttcaggagaatgataacaatatgtctctagacattccta |
46534819 |
T |
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| Q |
664 |
ggaaagttgtttctgaaattgagacagggtttattgagtttgcccgaagacattacgtgcaacatggtcaaccaaagattggtatagttagttcaggttg |
763 |
Q |
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| T |
46534818 |
ggaaagttgtttctgaaattgagacagggtttattgagtttgcccgaagacattacgtgcaacttggtcaaccaaagattggtatagttagttcaggttg |
46534719 |
T |
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| Q |
764 |
tctgatttgtatcatagagagaaggacattatatctcaccaacgttggagactcgcgcgctatacttggttctaagataggtattggtccatttaaaaga |
863 |
Q |
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| T |
46534718 |
tctgatttgtatcatagagagaaggacattatatctcgccaacgttggagactcgcgcgctatacttggttctaagatgggtattggtccatttaaaaga |
46534619 |
T |
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| Q |
864 |
ctgtgtgtaaagcaaatggctagagatcacagttgtaaataatcagaatattcgagatgaactcactgtattggcatgatgataatttgatttgcaact |
962 |
Q |
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| T |
46534618 |
ctgtgtgttaagcaaatggctagagatcacagttgt-aataatcagaatattcgagatgaactcgctgtatt-gcatgatgataattggatttgcaact |
46534522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 46535476 - 46535097
Alignment:
| Q |
8 |
atatagaactttcaaactcatcctttctccttcaatattttctctataatcacgnnnnnnnnc-cttttagagatattcttgagatgtatcatccatatc |
106 |
Q |
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| T |
46535476 |
atatagaactttcaaactcatcctttctccttcaatattttctctataatcacgttttttttatcttttagagatattcttgagatgtatcatccatatc |
46535377 |
T |
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| Q |
107 |
cagctctctaccaagcaagccttgrggcctgggaaaggaaaagaaaaacggttcattatgagactttgatgtagaccctttggcatggtcgataccattg |
206 |
Q |
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| T |
46535376 |
cagctctctaccaagcaagccttgatgcctgggaaagggaaagaaaaacggttcattatgagactttgatgtagaccctttggcatggtcgataccattg |
46535277 |
T |
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| Q |
207 |
gataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttg |
306 |
Q |
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| T |
46535276 |
gataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaatggtgcactctttg |
46535177 |
T |
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| Q |
307 |
ttggagtttatgatagctacaaaggcgacacggcatctaatatgtcaggaatcaca-tttccaggctctactgagtgagt |
385 |
Q |
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| T |
46535176 |
ttggagtttatgatggctacaaaggcgacacggcatctaatatgtcaggaatcacattttccaggctctagtgagtgagt |
46535097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 194 - 320
Target Start/End: Complemental strand, 46550411 - 46550285
Alignment:
| Q |
194 |
gtcgataccattggataagcatcactgtggccaattctccatggctgcggttcagtcaaatgtaaatatggaagatcacagtgaagttaaggttggcaat |
293 |
Q |
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| T |
46550411 |
gtcgatgccactggaagagcatcagtgtggccaattttccatggcagcagttcagtcaaatatgaatatggaagataaaagcaaagttcaggttggcaat |
46550312 |
T |
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| Q |
294 |
ggtgcactctttgttggagtttatgat |
320 |
Q |
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| T |
46550311 |
ggtgcactcaaagttggaatttatgat |
46550285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 920
Target Start/End: Original strand, 37041269 - 37041381
Alignment:
| Q |
807 |
gttggagactcgcgcgctatacttggttctaagataggtattggtccatttaaaagactgtgtgtaaagcaaatggctagagatcacagttgtaaataat |
906 |
Q |
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| T |
37041269 |
gttggagactcacgcgctattcttgtttctcataagggtgatggtccatttaaaaggttgcatgttaagcaaatggccagagatcacaattgtgaaaact |
37041368 |
T |
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| Q |
907 |
cagaatattcgaga |
920 |
Q |
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| T |
37041369 |
cag-atattcgaga |
37041381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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