View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784-Insertion-6 (Length: 567)
Name: NF5784-Insertion-6
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 82 - 567
Target Start/End: Original strand, 33159694 - 33160184
Alignment:
| Q |
82 |
ccattcaaatttactttattcaaatatcttgt--gtttctttcttacgatgaatggtgagcgatcacaattttttctcttttaaattctttgacaaatgt |
179 |
Q |
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||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
33159694 |
ccattcaaatttactttatccaaatatcttatatgtttctttcttacaatgaatggtgagcgatcacaattttttctgttttaaattctttgacaaatat |
33159793 |
T |
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| Q |
180 |
ttcggtctctaagtttatttttacattcgttcaataaatgatgtatctaaaata-tgaacctaggacgacattggtttaccacaattttgttttaagtaa |
278 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
33159794 |
ttcgatctctaagtttatttttacattcattcaataaatgatgtatctaaaaaaatgaatctaggacgacattggtttatcacaattttgttttaagtaa |
33159893 |
T |
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| Q |
279 |
gcacaattaatgaaagagtttatggtaactaggaagtcaaagaagttctttaatgatgattagagaacgaaaaatacac--nnnnnnnnnatcaagaaac |
376 |
Q |
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| T |
33159894 |
gcacaactaatgaaagagtttatggtaactaggaaatcaaagaagttctttaatgatgattagagaacgaaaaatacactttttttttttatcaagaaac |
33159993 |
T |
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| Q |
377 |
aagtctccaaaaagggttgatgagatactaaaatcagtgaaagtttaagtgtcaagaagctataaaatggatttgagggagaaagtgagataccatgtcc |
476 |
Q |
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| T |
33159994 |
aagtctccaaaaagggttgatgagatactaaaatcagtgaaagtttaagtgtcaagaagctataaaatggatttgagggagaaagtgagataccatgtcc |
33160093 |
T |
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| Q |
477 |
accttcaagtgggaaatgagtaagcattgatgaatgactagcaatgaattagatgacaaagcgcaataccaaactatatgagacatcttga |
567 |
Q |
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| T |
33160094 |
accttcaagtgggaaatgagtaagcattgatgaatgactagcaatgaataagatgacaaagcgcaataccaaactatatgagacatcttga |
33160184 |
T |
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Target: scaffold0477 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 9459 - 9385
Alignment:
| Q |
8 |
gataagacctttaccattgtagccaatatcttattacgaataatcccgacaacttctggagaaaaagaggcattc |
82 |
Q |
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| T |
9459 |
gataagacctttaccattgtagccaatatcttattacgaataattccgacaacttctggagaaaaagaggcattc |
9385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 18180458 - 18180384
Alignment:
| Q |
8 |
gataagacctttaccattgtagccaatatcttattacgaataatcccgacaacttctggagaaaaagaggcattc |
82 |
Q |
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| T |
18180458 |
gataagacctttaccattgtagccaatatcttattacgaataattccgacaacttctggagaaaaagaggcattc |
18180384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 43278183 - 43278109
Alignment:
| Q |
8 |
gataagacctttaccattgtagccaatatcttattacgaataatcccgacaacttctggagaaaaagaggcattc |
82 |
Q |
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| T |
43278183 |
gataagacctttgccgttgtagccaatatcttatttcgaataattccgacaacttctggagaaaaagaagcattc |
43278109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 22190945 - 22190894
Alignment:
| Q |
31 |
caatatcttattacgaataatcccgacaacttctggagaaaaagaggcattc |
82 |
Q |
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| T |
22190945 |
caatatcttattacaaataattccgataacttatggagaaaaagaggcattc |
22190894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 20223837 - 20223911
Alignment:
| Q |
8 |
gataagacctttaccattgtagccaatatcttattacgaataatcccgacaacttctggagaaaaagaggcattc |
82 |
Q |
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| T |
20223837 |
gataagacctttactattgtagccaatatcttattccgaataattccgacaacttttgaagaaaaagaggcattc |
20223911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 244181 - 244108
Alignment:
| Q |
8 |
gataagacctttaccattgtagccaatatcttattacgaataatcccgacaacttctggagaaaaagaggcatt |
81 |
Q |
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||||||||||| | ||| |||||||||| ||||| |||||||| ||||||||||| || |||||| ||||||| |
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| T |
244181 |
gataagaccttctcaattatagccaatattttattgcgaataattccgacaacttcaggggaaaaaaaggcatt |
244108 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 34492539 - 34492571
Alignment:
| Q |
196 |
atttttacattcgttcaataaatgatgtatcta |
228 |
Q |
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| T |
34492539 |
atttttacattcattcaataaatgatgtatcta |
34492571 |
T |
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