View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_high_3 (Length: 490)
Name: NF5784_high_3
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 53050492 - 53050016
Alignment:
| Q |
1 |
aatattaatgatgtaaatctgaagaatgcaaatatttatgtaccagctaccgaaggtttcttaaatgtgggatggggagggagttattgtcagaaaaggt |
100 |
Q |
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| T |
53050492 |
aatattaatgatgtaaatccgaagaatgcaaatatttatgtaccagctaccgaaggtttcttaaatgtgggatggggagggagttattgtcagaaaaggt |
53050393 |
T |
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| Q |
101 |
ttatgcaatactccgttaacaggtagaaattagacaaggagaagaaaacagataagtactttaagcaaggttatgatccactcacaaacttagatagata |
200 |
Q |
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| T |
53050392 |
ttatgtaatactccgttaacaggtagaaattagacaaggagaagaaaacagataagtactttaagtaaggttatgatccactcacaaacttagatagata |
53050293 |
T |
|
| Q |
201 |
ctatttaaaaatacagtaatcgttgtaaagtgtaaacccatgtagaggatgatctagtgatatgcaaaaaggatcaaaatgatcatctcttatacagaac |
300 |
Q |
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| T |
53050292 |
ctatttaaaaatacagtaatcgttgtaaagtgtaaacccatgtagaggatgatctagtgatatgcaaaaaggatcaaaatgatcatttcttatacagaac |
53050193 |
T |
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| Q |
301 |
acaataaaatgattttctttatttctagagtaagtctgctgcatcagtccttgcaacaaaacaaaggaaatgagctattaactggagattgaactgaggc |
400 |
Q |
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| T |
53050192 |
acaataaaatgattttctttatttctagagtaagtctgctgcatcagtccttgcaacaaaacaaaggaaatgagctattaactggagattgaactgaggc |
53050093 |
T |
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| Q |
401 |
aaaaaggggagcttattgactagagaaagccgcttcggtccaactgctttaatgtttagtattttgaggtcattttt |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53050092 |
aaaaaggggagcttattgactagagaaagccgcttcggtccaactgctttaatgtttagtattttgaggtcattttt |
53050016 |
T |
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