View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_high_6 (Length: 334)
Name: NF5784_high_6
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 47745156 - 47745290
Alignment:
| Q |
189 |
gtcattttagaatcacatagtttaagaggatttcttttattaattttacgagtgtttatcatttctgattaacatataatataatataacatggtattta |
288 |
Q |
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| T |
47745156 |
gtcattttagaatcatatagtttaagaggatttcttttattaattttacgagtgtttatcatttctgattaacatataatataatataacatggtattta |
47745255 |
T |
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| Q |
289 |
aa----gtgtgacatcggcacatcgcactatttga |
319 |
Q |
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| T |
47745256 |
aaacatgtgtgacatcggcacatcgcactatttga |
47745290 |
T |
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