View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_high_7 (Length: 277)
Name: NF5784_high_7
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_high_7 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 9629 - 9455
Alignment:
| Q |
87 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattccnnnnnnngggg-attcttttatcac |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
9629 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattcctttgtttgggggattcttttatcac |
9530 |
T |
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| Q |
186 |
gcgataaaaaatgaaattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9529 |
gcgataaaaaatgaaattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
9455 |
T |
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Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 18180628 - 18180454
Alignment:
| Q |
87 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattccnnnnnnngggg-attcttttatcac |
185 |
Q |
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| T |
18180628 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattcctttgtttgggggattcttttatcac |
18180529 |
T |
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| Q |
186 |
gcgataaaaaatgaaattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180528 |
gcgataaaaaatgaaattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
18180454 |
T |
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Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 100 - 260
Target Start/End: Complemental strand, 43278339 - 43278179
Alignment:
| Q |
100 |
gataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattccnnnnnnnggggattcttttatcacgcgataaaaaatga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
43278339 |
gataaaattatttgattaataagtccatttttacgttatttcgtacaatattgtacaatttctttgtttggggattcttttatcacgcgataaaaaatga |
43278240 |
T |
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| Q |
200 |
aattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
260 |
Q |
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| T |
43278239 |
aattttagaatggattgctacctatgactagatctcggataaatggaaattttattgataa |
43278179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 37189285 - 37189147
Alignment:
| Q |
87 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattccnnnnnnngggg-attcttttatcac |
185 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
37189285 |
aggccttccgtaggataaaattatttgattaataagtccatttttacgttatttcgtattgtattgtacaattcctttgtttggggaattcttttatcac |
37189186 |
T |
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| Q |
186 |
gcgataaaaaatgaaattttagaatggattgctacctat |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
37189185 |
gcgataaaaaatgaaattttagaatggattgctacctat |
37189147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 13477430 - 13477295
Alignment:
| Q |
87 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattcc-nnnnnnnggggattcttttatcac |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13477430 |
aggcctgccgtaggataaaattatttgattaataagtccatttttacgttatttcgtactgtattgtacaattcctttgtttgggggattcttttatcac |
13477331 |
T |
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| Q |
186 |
gcgataaaaaatgaaattttagaatggattgctacc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13477330 |
gcgataaaaaatgaaattttagaatggattgctacc |
13477295 |
T |
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Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 33159611 - 33159693
Alignment:
| Q |
1 |
tgacataatcttactctctgaactacaaaaatggattctctaatgtgtaatttacacgaaaaacaagaaagtgttatacataa |
83 |
Q |
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| T |
33159611 |
tgacataatcttactctctgagcttggagaatggattctctaatgtgtaatttacacgaaaaacaagaaagtgttatatataa |
33159693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 20223725 - 20223805
Alignment:
| Q |
183 |
cacgcgataaaaaatgaaattttagaatggattgct---acctatgactagatctcggataaatggaaattttattgataa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
20223725 |
cacgcgataaaaaatgaaattttagaatggattgctgctacctatgactagatctcagataaatgaaaattttattgataa |
20223805 |
T |
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