View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_low_1 (Length: 682)
Name: NF5784_low_1
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_low_1 |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 331 - 665
Target Start/End: Original strand, 20899562 - 20899885
Alignment:
| Q |
331 |
tacactttctccttttgaagatgtttctccgattaaaaaagttgttgtcatcaatattagacgtaatgtgagacgatcacactgtgtgatcatctttctt |
430 |
Q |
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| T |
20899562 |
tacactttctccttttgaagatgtttctccgattaaaaaagttgttgtcatcaatattagacgtaatgtgagacgatcacactgtgtgatcatctttctt |
20899661 |
T |
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| Q |
431 |
aattgctgacttgattttgcatgctatacaaacaaagattccttaatgtctactttgatcatttccnnnnnnnnnnnnnnnnctcctataatgtctagat |
530 |
Q |
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| T |
20899662 |
aattgctgacttgattttgcatgctatacaaacaaagattccttaatgtctattttaatcatttccttttttg-----------cctataatgtctagat |
20899750 |
T |
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| Q |
531 |
ttcaagcaggagtaacc-gatctcatgtatttcgtgaaattttgatgaatatttatctgtataccatgtatccaatatgaaaccgttaagcnnnnnnngc |
629 |
Q |
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| T |
20899751 |
ttctagcaggagtaaccaaatctcatgtatttcgtgatattttgatgaatatctatctgtataccatgtatccaatatgaaaacgtt-agctttttttgt |
20899849 |
T |
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| Q |
630 |
ggcatgtttgaatttatgatttaataggttatagtt |
665 |
Q |
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| T |
20899850 |
ggcatgtttgaatttatgatttaataggttatagtt |
20899885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 128 - 282
Target Start/End: Original strand, 20899267 - 20899429
Alignment:
| Q |
128 |
gaaccataagactgttctttaaataacattcttgtgtttttgtcatgttttcaattaatgcaaatgccaaaacaatgtgtagcttgaaacgcatgagttt |
227 |
Q |
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| T |
20899267 |
gaaccataagactgttctttaaatatcattcttgtgtttttgtcatgttttcaattaatgaaaacgccaaaataatgtgtagcttgaaacgcatgagttt |
20899366 |
T |
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| Q |
228 |
t--------attggtttatgataactatatgttggtatgaatatgattattatgttgcggtaa |
282 |
Q |
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| T |
20899367 |
ttacttccctttggtttatgataactatatgttggtatgaatatgattattatgttgcggtaa |
20899429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 376 - 666
Target Start/End: Original strand, 13949371 - 13949651
Alignment:
| Q |
376 |
tgtcatcaatattagacgtaatgtgagacgatcacactgtgtgatcatctttcttaattgctgacttgattttgcatgctatacaaacaaagattcctta |
475 |
Q |
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| T |
13949371 |
tgtcatcaatattagacgtaatgtgagacaatcacaccatgtgatcatctttcttaattcctgacttgattttgcatgctgtaaaaacaaatattcctta |
13949470 |
T |
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| Q |
476 |
atgtctactttgatcatttccnnnnnnnnnnnnnnnnctcctataatgtctagatttcaagcaggagtaaccg-atctcatgtatttcgtgaaattttga |
574 |
Q |
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| T |
13949471 |
atgtatactttgatcttttcc---------ttttttgctc--ataatgtcttgatttcaagcagaagtaaccgaatctcatgtatttcatgatattttga |
13949559 |
T |
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| Q |
575 |
tgaatatttatctgtataccatgtatccaatatgaaaccgttaagcnnnnnnngcggcatgtttgaatttatgatttaataggttatagttg |
666 |
Q |
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| T |
13949560 |
tgaatatctatctgtatatcttgtatccaatatcaaaacgatagctttttttcgcggcatgtttgaacttatgatttaataggttatagttg |
13949651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 20899153 - 20899207
Alignment:
| Q |
14 |
ttatactgcagacggggaggtttgtacacttacttagatccgtttgacctgatag |
68 |
Q |
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| T |
20899153 |
ttatactgcagacggggaggtttgtacacttacttagatccgtttgacctgatag |
20899207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 13949181 - 13949220
Alignment:
| Q |
249 |
tgttggtatgaatatgattattatgttgcggtaagtgaag |
288 |
Q |
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| T |
13949181 |
tgttggtatgaatatgattattatgttgcggtaagtgaag |
13949220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 376 - 666
Target Start/End: Original strand, 1511 - 1791
Alignment:
| Q |
376 |
tgtcatcaatattagacgtaatgtgagacgatcacactgtgtgatcatctttcttaattgctgacttgattttgcatgctatacaaacaaagattcctta |
475 |
Q |
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| T |
1511 |
tgtcatcaatattagacgtaatgtgagacaatcacaccatgtgatcatctttcttaattcctgacttgattttgcatgctgtaaaaacaaatattcctta |
1610 |
T |
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| Q |
476 |
atgtctactttgatcatttccnnnnnnnnnnnnnnnnctcctataatgtctagatttcaagcaggagtaaccg-atctcatgtatttcgtgaaattttga |
574 |
Q |
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| T |
1611 |
atgtatactttgatcttttcc---------ttttttgctc--ataatgtcttgatttcaagcagaagtaaccgaatctcatgtatttcatgatattttga |
1699 |
T |
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| Q |
575 |
tgaatatttatctgtataccatgtatccaatatgaaaccgttaagcnnnnnnngcggcatgtttgaatttatgatttaataggttatagttg |
666 |
Q |
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| T |
1700 |
tgaatatctatctgtatatcttgtatccaatatcaaaacgatagctttttttcgcggcatgtttgaacttatgatttaataggttatagttg |
1791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 1321 - 1360
Alignment:
| Q |
249 |
tgttggtatgaatatgattattatgttgcggtaagtgaag |
288 |
Q |
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| T |
1321 |
tgttggtatgaatatgattattatgttgcggtaagtgaag |
1360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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