View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_low_11 (Length: 243)
Name: NF5784_low_11
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 34343065 - 34343272
Alignment:
| Q |
16 |
cacatgtttggttttctaaaatccatggctcttaaatgggctattcaactaaacattccagatataatatacaaccatggaaaacctattaccctttctg |
115 |
Q |
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| T |
34343065 |
cacatgtttggttttctaaaatccatggctcttaaatgggctattcaactaaacattccagacataatctacaaccatggaaaacctattactctctctg |
34343164 |
T |
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| Q |
116 |
acttagtttcaaccctacaagttccactatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatctttgtaatccatgagaa |
215 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34343165 |
acttagtttcaactctacaagttccaatatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatatttgtaatccatgagaa |
34343264 |
T |
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| Q |
216 |
aggtgaaa |
223 |
Q |
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|||||||| |
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| T |
34343265 |
aggtgaaa |
34343272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 34330478 - 34330666
Alignment:
| Q |
30 |
tctaaaatccatggctcttaaatgggctattcaactaaacattccagatataatatacaaccatggaaaacctattaccctttctgacttagtttcaacc |
129 |
Q |
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||||||| ||||| |||| ||||| ||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
34330478 |
tctaaaacccatgtctctcaaatgtgctgttcaactaaacattccagaaataatatataaccatggaaaacccattactctccctgacttagtttcaact |
34330577 |
T |
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| Q |
130 |
ctacaagttccactatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatctttgtaatccatgagaaagg |
218 |
Q |
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||| ||||||||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||| |
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| T |
34330578 |
ctaaaagttccactagctaagtctagtcttgtcaaaagactcatgcgatttctagcacacattggaatctttgcaatccatgggaaagg |
34330666 |
T |
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