View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5784_low_2 (Length: 594)

Name: NF5784_low_2
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5784_low_2
NF5784_low_2
[»] chr8 (19 HSPs)
chr8 (37-441)||(32634989-32635393)
chr8 (444-591)||(32634198-32634345)
chr8 (490-594)||(14405645-14405749)
chr8 (524-594)||(13165809-13165879)
chr8 (525-594)||(5550717-5550786)
chr8 (525-594)||(5607143-5607212)
chr8 (525-594)||(5628158-5628227)
chr8 (324-442)||(5647212-5647330)
chr8 (99-428)||(5605362-5605688)
chr8 (99-428)||(5629682-5630008)
chr8 (533-594)||(6309582-6309643)
chr8 (324-431)||(6308580-6308687)
chr8 (380-434)||(14406404-14406458)
chr8 (376-440)||(13166872-13166936)
chr8 (197-283)||(14406555-14406641)
chr8 (390-434)||(5553137-5553181)
chr8 (198-291)||(13167021-13167114)
chr8 (195-232)||(6308451-6308488)
chr8 (198-230)||(5553338-5553370)
[»] scaffold0363 (3 HSPs)
scaffold0363 (490-594)||(13104-13208)
scaffold0363 (380-434)||(12395-12449)
scaffold0363 (197-283)||(12212-12298)
[»] chr3 (1 HSPs)
chr3 (543-585)||(36002733-36002775)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 37 - 441
Target Start/End: Complemental strand, 32635393 - 32634989
Alignment:
Q  37 aaggaaatattgtctgggatttcagacaagaaaggaacatttgtaccaaataatatcaagtgttttacattcacgaaagcaggagtaggaagtactttat 136  Q
    |||||||| |||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||| ||| |||||||||| ||||||||| |||||    
T  32635393 aaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaagtattttat 32635294  T
Q  137 gtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggcaaagttttcaggaagatccacaagactatcactgacggg 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  32635293 gtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatcactgatagg 32635194  T
Q  237 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcacccaactcaggcaaactcnnnnnnnnnttatcaactgaagaa 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||         |||||||||||||||    
T  32635193 agataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttatttgcaccgaactcaggcaaactcaaaaacaaattatcaactgaagaa 32635094  T
Q  337 aatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgc 436  Q
    |||| |||  |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||    
T  32635093 aatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctcttaagcgatatgc 32634994  T
Q  437 atcca 441  Q
    |||||    
T  32634993 atcca 32634989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 444 - 591
Target Start/End: Complemental strand, 32634345 - 32634198
Alignment:
Q  444 tatgaatgttagtacttagtatttctgtagtaagccgcacaatctgtatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctat 543  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  32634345 tatgaatgttagtacttagtattgctgtagtaagccgcataatctgtatagaaaacatgtgtataggaaggaaagtcagggtattattttcttactctat 32634246  T
Q  544 tatttttcaatacatcataaacttccttaggatcccacaatctactgc 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32634245 tatttttcaatacatcataaacttccttaggatcccacaatctactgc 32634198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 490 - 594
Target Start/End: Complemental strand, 14405749 - 14405645
Alignment:
Q  490 tatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctact 589  Q
    |||| ||||||| ||| |||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  14405749 tataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctattatttttcaatacatcgtaaacttccttaggatcacataatctact 14405650  T
Q  590 gcgtt 594  Q
    |||||    
T  14405649 gcgtt 14405645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 524 - 594
Target Start/End: Complemental strand, 13165879 - 13165809
Alignment:
Q  524 gtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgtt 594  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  13165879 gtatcattctcttactctattatttttcaatacatcaaaaacttccttaggatcacataatctactgcgtt 13165809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 594
Target Start/End: Complemental strand, 5550786 - 5550717
Alignment:
Q  525 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgtt 594  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||    
T  5550786 tatcattttcttactctattatttttcaatacgtcataaacttcctcaggatcacataatctactgcgtt 5550717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 594
Target Start/End: Original strand, 5607143 - 5607212
Alignment:
Q  525 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgtt 594  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  5607143 tatcattctcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgtt 5607212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 594
Target Start/End: Complemental strand, 5628227 - 5628158
Alignment:
Q  525 tatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgtt 594  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  5628227 tatcattctcttactctattatttttcaatacatcataaacttcctcaggatcacataatctactgcgtt 5628158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 324 - 442
Target Start/End: Complemental strand, 5647330 - 5647212
Alignment:
Q  324 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 423  Q
    ||||||||||| ||||| |||| ||||||||| |||||||| ||| | ||| ||||||||| ||  ||||||||||||||||||||||||  ||| ||||    
T  5647330 atcaactgaagcaaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtgttactgaaaaggctc 5647231  T
Q  424 ttaagcgacgtgcatccag 442  Q
    |||||| | || |||||||    
T  5647230 ttaagcaatgtacatccag 5647212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 428
Target Start/End: Original strand, 5605362 - 5605688
Alignment:
Q  99 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 198  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5605362 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5605461  T
Q  199 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 298  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5605462 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5605561  T
Q  299 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 398  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5605562 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5605658  T
Q  399 tgaacaagtgttactagaaatgctcttaag 428  Q
    ||||||||||||||| |||| |||||||||    
T  5605659 tgaacaagtgttactggaaaggctcttaag 5605688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 99 - 428
Target Start/End: Complemental strand, 5630008 - 5629682
Alignment:
Q  99 ttttacattcacgaaagcaggagtaggaagtactttatgtaaggtgatggaagagtcacgttcacctttcagtgaattcgcaagccaaatacaattggca 198  Q
    ||||||| | ||||| |||||| ||| ||||||||||| |||||| ||| |||||||| ||||||  ||||||| | | | ||||||||||  ||||  |    
T  5630008 ttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaa 5629909  T
Q  199 aagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattcgcaccca 298  Q
    |||||| |||||||||| ||||||| |||||| |  ||| |   |||   || |||||||| |||||||||||| |||||||||| || |||| || ||     
T  5629908 aagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatccc 5629809  T
Q  299 actcaggcaaactcnnnnnnnnnttatcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctgg 398  Q
    |||| |  |||  |           |||||| |||||||||| || | |||||||||  ||||||||||| |||||  |||||||   |  |||||||||    
T  5629808 actctgtaaaatacaaactcaa---atcaacggaagaaaatgggattgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctgg 5629712  T
Q  399 tgaacaagtgttactagaaatgctcttaag 428  Q
    ||||||||||||||| |||| |||||||||    
T  5629711 tgaacaagtgttactggaaaggctcttaag 5629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 533 - 594
Target Start/End: Original strand, 6309582 - 6309643
Alignment:
Q  533 tcttactctattatttttcaatacatcataaacttccttaggatcccacaatctactgcgtt 594  Q
    |||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||||    
T  6309582 tcttactctattatttttcaatacattacaaacttccttaggatcacataatctactgcgtt 6309643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 324 - 431
Target Start/End: Original strand, 6308580 - 6308687
Alignment:
Q  324 atcaactgaagaaaatgcgacttagaactcttggagattgatgcagtccatggcattcaattcacagagggctggtgaacaagtgttactagaaatgctc 423  Q
    |||||| || ||||||| |||| ||||||||| |||||||||||| ||| | || | |||||  | ||| |||||||||||||||||||| |||| ||||    
T  6308580 atcaacggatgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctc 6308679  T
Q  424 ttaagcga 431  Q
    ||||||||    
T  6308680 ttaagcga 6308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 14406458 - 14406404
Alignment:
Q  380 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 434  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  14406458 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 14406404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 13166936 - 13166872
Alignment:
Q  376 gcattcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgtgcatcc 440  Q
    ||||||||||||| || |||||| |||||||||||||| |||| ||||||||||||||| |||||    
T  13166936 gcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgacgtacatcc 13166872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 14406641 - 14406555
Alignment:
Q  197 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 283  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  14406641 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 14406555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 5553181 - 5553137
Alignment:
Q  390 gagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 434  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  5553181 gagggctggtgaacaagtgttactggaaaggctcttaagcgacgt 5553137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 13167114 - 13167021
Alignment:
Q  198 aaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttattc 291  Q
    |||||||||||||||||||||||||| ||||||||  ||| | |  ||   |  |||||||||| ||||||||||||||||||||| || ||||    
T  13167114 aaagttttcaggaagatccacaagacaatcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatggaagttcattc 13167021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 6308451 - 6308488
Alignment:
Q  195 ggcaaagttttcaggaagatccacaagactatcactga 232  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  6308451 ggcaaagttttctggaagatccacaagacaatcactga 6308488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 5553370 - 5553338
Alignment:
Q  198 aaagttttcaggaagatccacaagactatcact 230  Q
    |||||||||||||||||||||||||| ||||||    
T  5553370 aaagttttcaggaagatccacaagacaatcact 5553338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 490 - 594
Target Start/End: Original strand, 13104 - 13208
Alignment:
Q  490 tatagaaaacatgtgtttagggaggaaagtcagggtatcattttcttactctattatttttcaatacatcataaacttccttaggatcccacaatctact 589  Q
    |||| ||||||| ||| |||| ||| |||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  13104 tataaaaaacatatgtgtaggaagggaagtgagggtttcattctcttactctattatttttcaatacatcgtaaacttccttaggatcacataatctact 13203  T
Q  590 gcgtt 594  Q
    |||||    
T  13204 gcgtt 13208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 12395 - 12449
Alignment:
Q  380 tcaattcacagagggctggtgaacaagtgttactagaaatgctcttaagcgacgt 434  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||    
T  12395 tcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgacgt 12449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 12212 - 12298
Alignment:
Q  197 caaagttttcaggaagatccacaagactatcactgacgggagataaaaaatattcaagattttttgtatgcaatattgatgatggaa 283  Q
    |||||||||||| ||||| |||||||| ||||||||  ||| | ||||| | | |||||||||||| |||||||| |||||||||||    
T  12212 caaagttttcagtaagattcacaagacaatcactgattggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaa 12298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 585
Target Start/End: Original strand, 36002733 - 36002775
Alignment:
Q  543 ttatttttcaatacatcataaacttccttaggatcccacaatc 585  Q
    |||| |||||||| |||||| ||||||||||||||||||||||    
T  36002733 ttatatttcaataaatcatacacttccttaggatcccacaatc 36002775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University