View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_low_3 (Length: 494)
Name: NF5784_low_3
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 124 - 478
Target Start/End: Original strand, 36596251 - 36596604
Alignment:
| Q |
124 |
ttaggtatgttatcacaattcttttaaagtgatctcgaaaaaaccttagaataaacttgattataaaaaacttttatttagatgatgaaaggtttttata |
223 |
Q |
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| T |
36596251 |
ttaggtttgttatcacaattcttttaaagtgatctagaaaa-accttagaataaacttgattataaaaaacttttatttagatgatgaaaggtttttata |
36596349 |
T |
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| Q |
224 |
tgttaagttgaaagcgcaatttttcattttacaggattttgagtacattgaggtgtatagggttcgaatctcaacccttacatataacattacatctcat |
323 |
Q |
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| T |
36596350 |
tgctaagttgaaagcgcaatttttcattttacaggattttgagtacattgaggtgtttagtattcaaatctcaacccttacatataacattacatctcac |
36596449 |
T |
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| Q |
324 |
tttcaaatgaatttgctcacacgaggaccgctattaattttgttgagaatataaagtagttttataatgtaattggagtattatttttcagcaagcatca |
423 |
Q |
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| T |
36596450 |
tgtcaaatgaatttgctcacacgaggaccgctattaattttgttgagaatataaagtagttttataatgtaataggaatattatttttcagcaagcatca |
36596549 |
T |
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| Q |
424 |
ataagatatttaagctagcatatg-aaaactcagtctatatttcatgacatatctg |
478 |
Q |
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| T |
36596550 |
at-agatatttaagctagcatatgaaaaactcagcctatatttcatgacatatctg |
36596604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 36595654 - 36595744
Alignment:
| Q |
19 |
gcaactgcatgactgcctaattaatatacatcgtgccacctctctttcacccagttcatcctatcctttctggtagttagttagttggtgt |
109 |
Q |
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| T |
36595654 |
gcaactgcatgactgcctaattaatatacatcgtgccacctctctttcacccagttcatcctatcctttctggtagttagttagttggtgt |
36595744 |
T |
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