View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5784_low_5 (Length: 376)
Name: NF5784_low_5
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5784_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 41747624 - 41747975
Alignment:
| Q |
19 |
cctataggctctaataatacaattgctattttatttattcccaaactttgaatgcgtttaagatttaatgacaattgcttcacaagtgaagcagtgaact |
118 |
Q |
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| T |
41747624 |
cctataggctctaataatacaattgctattttatttattcccaaactttgaatgcgtttaagatttaatgacaattgcttcacaagtgaagcagtgaact |
41747723 |
T |
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| Q |
119 |
tggatacaccctacaaaatgtattgagaaatgaaactattgacaatacatgatcattgttttatttattgtataaactaaattcaattgtacttttcgaa |
218 |
Q |
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| T |
41747724 |
tggatacaccctacaaaatgtattgagaaatgaaattattgacaatacatgatcattgctttatttattgtataaactaaattcaattgtacttttcgaa |
41747823 |
T |
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| Q |
219 |
ttgagttcgatgaacatttaattagtctaattacttaattaccttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagcactg |
318 |
Q |
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| T |
41747824 |
ttgagttcgatggacatttaataagtctaattacttaattaccttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagcacta |
41747923 |
T |
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| Q |
319 |
atgagagaaattgaggattgaaggtcgggtttggtatacacatattcttgga |
370 |
Q |
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| T |
41747924 |
acgagagaaattgaggattgaaggtcgggtttggtatacacattttgttgga |
41747975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 41739423 - 41739521
Alignment:
| Q |
19 |
cctataggctctaataatacaattgctattttatttattcccaaactttgaatgcgtttaagatttaatgacaattgcttcacaagtgaagcagtgaac |
117 |
Q |
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| T |
41739423 |
cctataggttctaataatccaattgctattttatttattcccaagctttgaatgcgtctaagatttgatgataattgattcacaagtgatgcagtgaac |
41739521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 41739828 - 41739888
Alignment:
| Q |
259 |
accttggtgctcctcccatttttaacaaaaaatttaagatagtcgttaccagcagcactga |
319 |
Q |
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| T |
41739828 |
accttagtgctccccccgtttgtaacaaaaaatttaagatagtcgttaccagcagcgctga |
41739888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 41733527 - 41733603
Alignment:
| Q |
22 |
ataggctctaataatacaattgctattttatttattcccaaactttgaatgcgtttaagatttaatgacaattgctt |
98 |
Q |
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| T |
41733527 |
ataggctctaataaaccaattgctattttgtttattcccaactcgtgaatacgttttagattcaatgacatttgctt |
41733603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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