View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5784_low_6 (Length: 354)

Name: NF5784_low_6
Description: NF5784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5784_low_6
NF5784_low_6
[»] chr8 (3 HSPs)
chr8 (12-306)||(16905995-16906290)
chr8 (12-121)||(22594581-22594690)
chr8 (271-306)||(22594552-22594587)
[»] chr3 (1 HSPs)
chr3 (12-306)||(53227738-53228033)
[»] chr4 (2 HSPs)
chr4 (12-306)||(53595703-53595998)
chr4 (12-121)||(2735059-2735168)
[»] chr1 (3 HSPs)
chr1 (12-298)||(38658414-38658704)
chr1 (12-121)||(16659591-16659700)
chr1 (271-306)||(16659694-16659729)
[»] chr6 (3 HSPs)
chr6 (12-306)||(12587409-12587696)
chr6 (12-121)||(28865860-28865969)
chr6 (271-306)||(28865831-28865866)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-303)||(12271-12565)
[»] scaffold0150 (1 HSPs)
scaffold0150 (188-303)||(39117-39233)
[»] chr7 (2 HSPs)
chr7 (12-121)||(42754179-42754288)
chr7 (271-306)||(42754150-42754185)
[»] chr5 (9 HSPs)
chr5 (12-121)||(28905144-28905253)
chr5 (12-121)||(28941539-28941648)
chr5 (12-121)||(30645414-30645523)
chr5 (12-121)||(14347660-14347769)
chr5 (12-121)||(39548285-39548394)
chr5 (271-306)||(14347631-14347666)
chr5 (271-306)||(28905247-28905282)
chr5 (271-306)||(28941642-28941677)
chr5 (271-306)||(30645517-30645552)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 16905995 - 16906290
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16905995 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 16906094  T
Q  112 gtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaatttcctttcaac 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  16906095 gtggagtttgattattgcgctaatcaccatgttcgtccaattcttcatgattcgttgttcattccttcacacacatcaaattatttaatttcttttcaac 16906194  T
Q  212 aatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  16906195 aatttaatttagcatttttttttgggaattaaagttgatatatgagattagagattgaatgatttttggttctaaattggtaaagattgaaaaaga 16906290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 22594690 - 22594581
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22594690 gatctactatccactgtcgtttttctagattcaaggttttgttgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 22594591  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  22594590 gtggattttg 22594581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 22594587 - 22594552
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  22594587 gattttgggttctaaattggtaaagattgaaaaaga 22594552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 53227738 - 53228033
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  53227738 gatctactatccaatgttgtttttctagattcaagattttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 53227837  T
Q  112 gtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaatttcctttcaac 211  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53227838 gtggagtttgattattgcgctaatcaccatgctcatccaattcttcatgattcgttgttcattccttcacacacatcaaattatttaatttcctttcaac 53227937  T
Q  212 aatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53227938 aatttaatttagcatctttttctggaaattaaagttgatatatgagattagagattgaatgattttgggttctaaattggtaaagattgaaaaaga 53228033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 53595703 - 53595998
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  53595703 gatctaatatccattgtcgtttttctagatttaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatt 53595802  T
Q  112 gtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaatttcctttcaac 211  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53595803 gtggagtttgattattgcgctaatcaccatgctcgtccaattattcatgattcgttgttcattccttcacacacatcaaattatttaatttcctttcaac 53595902  T
Q  212 aatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53595903 aatttaatttagcatctttttctgggaattaaagttaatatatgagattagagattgaatgattttgggttctaaattggtaaagattgaaaaaga 53595998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 2735168 - 2735059
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2735168 gatctgctatccaatgtcgtttttctagattgaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 2735069  T
Q  112 gtggagtttg 121  Q
     |||| ||||    
T  2735068 atggattttg 2735059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 38658414 - 38658704
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38658414 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 38658513  T
Q  112 gtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaatttcctttcaac 211  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38658514 gtggaatttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttcacacacatcaaattatttaatttcctttcaac 38658613  T
Q  212 aatttaatttagcatctttttctaggaattaaagt---tgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagatt 298  Q
    ||||||||||||||||||||| | |||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||  |||||||    
T  38658614 aatttaatttagcatctttttttgggaattaaagttgctgatatatgagattagagattgaatgattttgggttctaaattgaaaaagatt 38658704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 16659591 - 16659700
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  16659591 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaattgttttaggaaactatgaagaataagattgaagaaatg 16659690  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  16659691 gtggattttg 16659700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 16659694 - 16659729
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  16659694 gattttgggttctaaattggtaaagattgaaaaaga 16659729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 12587409 - 12587696
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12587409 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 12587508  T
Q  112 gtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaatttcctttcaac 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||        | ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  12587509 gtggagtttgattattgcgccaatcaccatgctcgtccaattc--------tagttgttcattccttcacacacatcaaattatttaatttcccttcaac 12587600  T
Q  212 aatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12587601 aatttaatttagcatctttttctgggaattaaagttgatatatgagattagagattgaatgattttgggttctaaattggtaaagattgaaaaaga 12587696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 28865969 - 28865860
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  28865969 gatctactatccactgtcgtttttctagattcaaagttttggtgagagagaaaaatggaaatggttttaggaaactataaagaataagattgaagaaatg 28865870  T
Q  112 gtggagtttg 121  Q
     |||| ||||    
T  28865869 atggattttg 28865860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 28865866 - 28865831
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  28865866 gattttgggttctaaattggtaaagattgaaaaaga 28865831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 12565 - 12271
Alignment:
Q  1 atggtgagagagatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataaga 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||   | |               
T  12565 atggtgagagagatctactatccaccgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaatggtttcaggatctttttg--------- 12475  T
Q  101 ttgaagaaatggtggagtttgattattgcgctaatcaccatgctcgtccaattcttcatgattcgttgttcattccttctcacacatcaaattatttaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12474 ttgaagaaatggtggagtttgattattgcgctaatcaccatgctcctccaattcttcatgattcgttgttcattccttcacacacatcaaattatttaat 12375  T
Q  201 ttcctttcaacaatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaattggtaaagattg 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12374 ttcctttcaacaatttaatttagcatctttttctgggaattaaagttgatatatgagattagagattgaatgattttgggttctaaattggtaaagattg 12275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 39233 - 39117
Alignment:
Q  188 caaattatttaatttcctttcaacaatttaatttagcatctttttctaggaattaaagttgatatatgagattagaga-tgaatgattttgggttctaaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39233 caaattatttaatttcctttcaacaatttaatttagcatctttttctgggaattaaagttgatatatgagattagagattgaatgattttgggttctaaa 39134  T
Q  287 ttggtaaagattgaaaa 303  Q
    |||||||||||||||||    
T  39133 ttggtaaagattgaaaa 39117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 42754288 - 42754179
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42754288 gatctacaatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 42754189  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  42754188 gtggattttg 42754179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 42754185 - 42754150
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  42754185 gattttgggttctaaattggtaaagattgaaaaaga 42754150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 28905144 - 28905253
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  28905144 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaattgttttaggaaactatgaagaataagattgaagaaatg 28905243  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  28905244 gtggattttg 28905253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 28941539 - 28941648
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  28941539 gatctactatccactgtcgtttttctagattcaaggttttggtgagagagaaaaatggaaattgttttaggaaactatgaagaataagattgaagaaatg 28941638  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  28941639 gtggattttg 28941648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 30645414 - 30645523
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30645414 gatctactatccactgtcgtttttctagattcaaggtttttgtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 30645513  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  30645514 gtggattttg 30645523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 14347769 - 14347660
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14347769 gatctactattcactgtcgtgtttctagattcaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 14347670  T
Q  112 gtggagtttg 121  Q
    ||||| ||||    
T  14347669 gtggattttg 14347660  T

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Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 39548285 - 39548394
Alignment:
Q  12 gatctactatccactgtcgtttttctagattcaaggttttggtgaaagagaaaaatggaattggttttaggaaactatgaagaataagattgaagaaatg 111  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39548285 gatctactatccaatgtcgtttttctaaattgaaggttttggtgagagagaaaaatggaaatggttttaggaaactatgaagaataagattgaagaaatg 39548384  T
Q  112 gtggagtttg 121  Q
     |||| ||||    
T  39548385 atggattttg 39548394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Complemental strand, 14347666 - 14347631
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  14347666 gattttgggttctaaattggtaaagattgaaaaaga 14347631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 28905247 - 28905282
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  28905247 gattttgggttctaaattggtaaagattgaaaaaga 28905282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 28941642 - 28941677
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    ||||||||||||||||||||||||||||||||||||    
T  28941642 gattttgggttctaaattggtaaagattgaaaaaga 28941677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 306
Target Start/End: Original strand, 30645517 - 30645552
Alignment:
Q  271 gattttgggttctaaattggtaaagattgaaaaaga 306  Q
    |||||||||||||||||||||||| |||||||||||    
T  30645517 gattttgggttctaaattggtaaatattgaaaaaga 30645552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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