View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5785-Insertion-1 (Length: 1130)
Name: NF5785-Insertion-1
Description: NF5785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5785-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 492 - 1069
Target Start/End: Original strand, 3312184 - 3312764
Alignment:
| Q |
492 |
agattatagaatccaagaataaaatgtgaatttgaagggcgcatgagaggtatgaatgataaaatgtcatgtctttaaatttgtctaaggcctactaatg |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3312184 |
agattatagaatccaagaataaaatgtgaatttgaagggcacgtgagaggtatgaatgataaaatgtcatgtctttaaatttgtctaaggcctactaatg |
3312283 |
T |
|
| Q |
592 |
tattgggtgggccatgtagggatttaataggctggctaagtaaaatacaaatacaaaatatgaaagttagatcaccaaaggaacaactagatagaaattt |
691 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
3312284 |
tattgggtgggccatgtagggatttaataggctggctaagtaaaatacaaatacacaatatgaaagttagatcacaaaaggaacagctagatagaaattt |
3312383 |
T |
|
| Q |
692 |
atgttatcactcttgataggattgccataattccctcattccattcagttttttgtgttggccacaaattcacgttgtgacaaatttacgaagataaact |
791 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3312384 |
atgttatcactcttgatggaattgccataattccctcattccattcagttttttgtgttggccacaaattcacgttgtgacaaatttacgaagataaact |
3312483 |
T |
|
| Q |
792 |
atatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatgacttattgattttacatc-aaagatgaga |
890 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
3312484 |
atatatgtaaaacacatcttcacttttggattactataaaaccagtgaactttgtgcatgtgcgattgatggcttattgattttacatcaaaagatgaga |
3312583 |
T |
|
| Q |
891 |
ttgataaggatactctcttagatcttataataaagaggaccgtgaacttctacttttaaagatccatgttagttatcattagaattttaaatga-tttca |
989 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3312584 |
ttgatagggacactctcttagatcttataataaagagaaccgcgaacttctacttttaaagatccatgttagttatcgttagaattttaaatgattttca |
3312683 |
T |
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| Q |
990 |
agtattgatccattgtactcaatcattgttgcctagaaactataagacaaatcataagtc-aagtgtgctatagtttttta |
1069 |
Q |
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| T |
3312684 |
agtattgatccattgtactcaatcattgttgcctagaaactataagacaaatcataagtcaaagtgtgctatagtttttta |
3312764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 3311703 - 3312160
Alignment:
| Q |
8 |
acttttgtggtcgtcctgttgcctctaacacgaccggggtatgccttcataactgaaacaaatcaaaatacaaaaactgatcaatatattaaagaaagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3311703 |
acttttgtggtcgtcctgttgcctctaacacgactggggtatgcctccataactgaaacaaatcaaaatacaaaaaccgatcaatatattaaagaaagtt |
3311802 |
T |
|
| Q |
108 |
tcgagataagtcaaaattcatcataactaacttcgtctcgtattttataaaccaaattcgttaataatgcatttcgatttaaaaaatctcaaaatattga |
207 |
Q |
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| T |
3311803 |
ttgagataagtcaaaattcatcataactaacttcgtctcgtattttataaatcaaattcgttaataatgcatttcgatttaaaaaatctcaaaatattga |
3311902 |
T |
|
| Q |
208 |
acagccagtagnnnnnnnnntcaaacaaaccaatgaatgtttgagcaaatgagatctaacattttgtttagtggtggaaaatgtctcaaaaacaatgggt |
307 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
3311903 |
ac-gccagtagaaaaaaa--tcaaacaaaccaatgaatgtttgagcaaatgagatctaacattt-gtttagtggtgggaaatgtctcaaaaacaatgggt |
3311998 |
T |
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| Q |
308 |
ttaagtaacttgactttaaaaatgacatactgtagcaagattcaaatattggggaggttgagagttttttagggaaaatatcgtaactaatgaaataggg |
407 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3311999 |
ttaagtaacttgactttaaaaatgacatactttagcaagattcaaatattggggaggttgagagttttttagggcaaatatcgtaactaatgaaataggg |
3312098 |
T |
|
| Q |
408 |
ggaaggaagtttagcccgacttatatatcaacatggttcatattctataatccgaaaatgtg |
469 |
Q |
| |
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| T |
3312099 |
ggaaggaagtttagcccgacttatatatcaacatggttcatattctataatccgaaaatgtg |
3312160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 836 - 1068
Target Start/End: Original strand, 3319639 - 3319874
Alignment:
| Q |
836 |
gtgaactttgtgcatgtgcgattgatgacttattgattttacatcaaa-gatgagattgataaggatactctcttagatcttataataaagaggaccgtg |
934 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||| || | | ||| |
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| T |
3319639 |
gtgaactttgtgcaagtgcgattgatgatttattgattttacaccaaaagatgagaccgatagggatactctcttagatcttataattaaaaaaatcgta |
3319738 |
T |
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| Q |
935 |
aacttctacttttaaagatccatgttagttatcattagaattttaaat-gatttcaagtattgatccattgtactcaatcattgttgcctagaaactata |
1033 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||| |||||||||| | |||||||||| |||| || || |||||||||| ||||||||||||||| |
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| T |
3319739 |
aacttctacttctaaagatccatgttagttatcgttataattttaaatggttttcaagtatagatctatcatattcaatcattgatgcctagaaactata |
3319838 |
T |
|
| Q |
1034 |
agacaaatcataagt-caagtgtgctatagtttttt |
1068 |
Q |
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| ||||||||||| | ||||| ||||||||||||| |
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| T |
3319839 |
atacaaatcataaatgaaagtgagctatagtttttt |
3319874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 3319378 - 3319454
Alignment:
| Q |
61 |
tgaaacaaatcaaaatacaaaaactgatcaatatattaaagaaagtttcgagataagtcaaaattcatcataactaa |
137 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
3319378 |
tgaaagaaatcaaaatgcaaaaacacatcaatatattgaagaaaattttgagataagtcaaaattcatcataactaa |
3319454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 707 - 774
Target Start/End: Original strand, 3319490 - 3319559
Alignment:
| Q |
707 |
ataggattgccataattccctcattccattcagtt--ttttgtgttggccacaaattcacgttgtgacaa |
774 |
Q |
| |
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|||||||||||| |||| |||||||||||| | || |||||| ||||||||||||||| |||||||||| |
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| T |
3319490 |
ataggattgccagaatttcctcattccatttatttatttttgtattggccacaaattcaagttgtgacaa |
3319559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 31042219 - 31042152
Alignment:
| Q |
263 |
ctaacattttgtttagtggtggaaaatgtctcaaaaacaatgggtttaagtaacttgactttaaaaat |
330 |
Q |
| |
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||||| |||||| |||||||||||||||||||||| | || | |||||| || |||||||||||||| |
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| T |
31042219 |
ctaaccttttgtctagtggtggaaaatgtctcaaatgcgatagatttaagcaatttgactttaaaaat |
31042152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 47594606 - 47594517
Alignment:
| Q |
244 |
atgtttgagcaaatgagatctaacattttgtttagtggtggaaaatgtctcaaaaacaatgggtttaagtaacttgactttaaaaatgaca |
334 |
Q |
| |
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|||||||||||||| || ||||||| |||||||||||||| ||| ||||||||| | |||| || ||| ||||| |||| ||| |||||| |
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| T |
47594606 |
atgtttgagcaaatttgaactaacatcttgtttagtggtgg-aaaggtctcaaaagcgatggattcaagcaacttaacttgaaatatgaca |
47594517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 41151420 - 41151351
Alignment:
| Q |
229 |
caaacaaaccaatgaatgtttgagcaaatgagatctaacattttgtttagtggtggaaaatgtctcaaaa |
298 |
Q |
| |
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|||| |||||| | || |||||||||||||| | ||||||||||||||| |||||| ||| || |||||| |
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| T |
41151420 |
caaataaaccactaaaagtttgagcaaatgaaaactaacattttgtttaatggtgggaaaggtgtcaaaa |
41151351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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