View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5785-Insertion-3 (Length: 406)
Name: NF5785-Insertion-3
Description: NF5785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5785-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 9237192 - 9237590
Alignment:
| Q |
8 |
cacttttgctaaaaataatgacattcatgcctttcgacaatttttgttttcaaatgtttacaaaatcggctcgtttgacaaatgggaacgcaactatcaa |
107 |
Q |
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| T |
9237192 |
cacttttgctaaaaataatgacattcatgcctttagacaatttttgttttcaaacgtttacaaaatcggctcgtttgacaaatgggaacgcaactatcaa |
9237291 |
T |
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| Q |
108 |
gttggtaaaaccatgtagaaaatcgtggtatatcacaaactcagactatacgactagtcgactatcatcactcaaccataacaataacgactctaattgc |
207 |
Q |
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| T |
9237292 |
gttggtaaaaccatgtagaaaatcgtggtatatcacaaactcagactatacgactagtcgactatcatcactgaaccataacaataacgactctaattgc |
9237391 |
T |
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| Q |
208 |
caccaacaagcatacgaaatagacaaatggtaaatatgatgtcatgactcgtgactgctttagctaaagagatagagaaagaagaaaatggatcccatgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237392 |
caccaacaagcatacgaaatagacaaatggtaaatatgatgtcatgactcgtgactgctttagctaaagagatagagaaagaagaaaatggatcccatgc |
9237491 |
T |
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| Q |
308 |
agaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaaatattaagtctcacctgtctgtttctcaacag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237492 |
agaggactttaaattaaagttcaacatttatctgtcttataatgtaaaaccaatatgcatgcaaaaaatattaagtctcacctgtctgtttctcaacag |
9237590 |
T |
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