View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5785_high_1 (Length: 439)
Name: NF5785_high_1
Description: NF5785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5785_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 34816959 - 34817369
Alignment:
| Q |
13 |
tgcaccaaagtgagtggttaatacatgttaaatggttgagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcggggcagtgg |
112 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
34816959 |
tgcaccacagtgtgtggttaatacatgttaaatggttgagcgttgctacttggtgcgagaaataacactgcgactggcacacgaatcatgggggcagtgg |
34817058 |
T |
|
| Q |
113 |
tattattttttcaaatacatgaaaatcaaaatacactgcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
34817059 |
tattattttttcaaatacatgaaaatcaaaatacactgcaatctaatgcaagatccaacggtgcctatctattcgttgtt-ttttgtgggtagtttgtcg |
34817157 |
T |
|
| Q |
213 |
cactatcaatctttttcctaaatggttctattattattggtcattctttgttagctaaccaagactcgtatgataaatctgaaagataatgggttagtgt |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817158 |
cactatcaatctttttcctagatggttctattattattggtcattctttgttagctaaccaagactcgtatgataaatctgaaagataatgggttagtgc |
34817257 |
T |
|
| Q |
313 |
atattagtgacatgagttttatatttgccatttc-nnnnnnnnngtgacatcagtttagttggattagttgaacaaggtttgcaaggtgatggaactaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817258 |
atattagtgacatgagttttatatttgccatttcaaaaaaaaaagtgacatcagtttagttggactagttgaacaaggtttgcaaggtgatggaactaaa |
34817357 |
T |
|
| Q |
412 |
attgaagagttg |
423 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34817358 |
attgaagagttg |
34817369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 23472364 - 23472184
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcggggcagtggtattattttttc-aaatacatgaaaatcaaaatacac |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||| ||| |||| ||| |||||||| || |
|
|
| T |
23472364 |
gagcattgctacttggtgcgagaaataacagtgcgactggcacacaaatcat-ggggcagtggtattattttttcaaaaaacataaaagtcaaaataaac |
23472266 |
T |
|
| Q |
149 |
tgcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtcacactatcaatctttttcct |
231 |
Q |
| |
|
|||||||||||| || | |||||||||||||| ||||| ||||| ||| |||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
23472265 |
tgcaatctaatgaaatatccaacggtacctatttattcgttgtt-tttcgtgggtagtttgtcgcactatcaagctttttcct |
23472184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 41553100 - 41552920
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcggggcagtggtattattttttc-aaatacatgaaaatcaaaatacac |
148 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||| ||| |||||||| || |
|
|
| T |
41553100 |
gagcattgctacttggtgcgagaaataacactgcgactggcacacgaatcat-ggggcagtggtattattttttcaaaatacataaaagtcaaaataaac |
41553002 |
T |
|
| Q |
149 |
tgcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtcacactatcaatctttttcct |
231 |
Q |
| |
|
|||||||||||| || | |||| ||||||||| ||||| ||||| ||| ||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
41553001 |
tgcaatctaatgaaatatccaatggtacctatttattcattgtt-tttcatggatagtttgtcgcactatcaaactttttcct |
41552920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 14477835 - 14477656
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcggggcagtggtattattttttcaaatacatgaaaatcaaaatacact |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
14477835 |
gagcgttgctacttggtgcgagaaataacagtgcaactgacacacgaatcatgggggcagtggtattattttctcaaatacatgaaagtcaaaatacact |
14477736 |
T |
|
| Q |
150 |
gcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtcacactatcaatctttttcc |
230 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||| ||| |||| || ||| || |||||||||||||||||| |
|
|
| T |
14477735 |
gcaatctaatgcaagatccaacggtgcctatctattcgttgtt-tttcgtggataatttatcgcactatcaatctttttcc |
14477656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 45802172 - 45801991
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcgggg-cagtggtattattttttcaaatacatgaaaatcaaaatacac |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
45802172 |
gagcattgctacttggtgcgagaaataacagtgcgactggcacacgaatcatggggggcagtggtattattttttcaaatgcatgaaagtcaaaatacac |
45802073 |
T |
|
| Q |
149 |
tgcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtcacactatcaatctttttcct |
231 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||| ||||| ||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
45802072 |
tgcaatctaatgcaagatccaacgatgcctatctattcgttgtt-tttcgtgggtagtttgtcgcactatcaatctttttcct |
45801991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 32518017 - 32518061
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataacactgcgactgacacac |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
32518017 |
gagcgttgctacttggtgcgagaaataacagtgcgattggcacac |
32518061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 46 - 233
Target Start/End: Complemental strand, 32953574 - 32953389
Alignment:
| Q |
46 |
ggttgagcgttgctacttggtgcgagaaataacactgcgactgacacactcatcatcggggcagtggtattattttttcaaatacatgaaaatcaaaata |
145 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| | ||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
32953574 |
ggttgagagttgctacttgatgcgagaaataacagtgcgactggcacacgaatcat-gtggcagtggtattattttttcaaatatatgaaaatcaaagta |
32953476 |
T |
|
| Q |
146 |
cactgcaatctaatgcaagaaccaacggtacctatctattccttgttcttttgtggctagtttgtcacactatcaatctttttcctaa |
233 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||||||||| ||||| |||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
32953475 |
cact-caatctaatgcaagatccaacggtcactatctattcgttgtttttttgtgggtaatttgtcgcactatcaatctttttcctaa |
32953389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 14523550 - 14523579
Alignment:
| Q |
50 |
gagcgttgctacttggtgcgagaaataaca |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14523550 |
gagcgttgctacttggtgcgagaaataaca |
14523579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University