View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5785_low_3 (Length: 219)
Name: NF5785_low_3
Description: NF5785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5785_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 41700404 - 41700582
Alignment:
| Q |
5 |
caaataaaaccatatgtgataagataagataccaacggaaacttggcgcaagcaaagcattctcttataaaattcgaaacatctcatttgagttgtgaac |
104 |
Q |
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| T |
41700404 |
caaataaaaccatatgtgataagataagataccaacggaaacttggcgcaagc-----attctcttataaaattcgaaacatctcatttgagttgtgaac |
41700498 |
T |
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| Q |
105 |
aacatgcagttgactcatctagtattcaagccggagataatctctatcattttcaaatgcaattctaaaaacgacaaagtgaat |
188 |
Q |
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| T |
41700499 |
aacatgcagttgactcatctagtattcaagcaggagataatctctatcattttcaaatgcaattctaaaaacgacaaagtgaat |
41700582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Original strand, 41700562 - 41700593
Alignment:
| Q |
188 |
tctaaaaacgacaaagtgaatgagttcataat |
219 |
Q |
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| T |
41700562 |
tctaaaaacgacaaagtgaatgagttcataat |
41700593 |
T |
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