View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786-Insertion-1 (Length: 1075)
Name: NF5786-Insertion-1
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 615 - 1072
Target Start/End: Complemental strand, 23390528 - 23390058
Alignment:
| Q |
615 |
gtctgtgttggattgccgtcgtgaccgcaaacccaatgtgtgttgg-tttctttgtttttgtattggcagcagggtaaaaactaaaattggcaaagtgct |
713 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23390528 |
gtctgtgttggattgccgtcgtgaccgcaa-cccagtctgtgttgggtttctttgtttttgtattggcagcagggtaaaaactaaaattggcaaagtgct |
23390430 |
T |
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| Q |
714 |
ataatattaataaggtttgcaacttataatcaaaagcaggtgattaatatgctcagcagtttcctcatgagcttcattcagaagggtatgtatctagctg |
813 |
Q |
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| T |
23390429 |
ataatattaataaggtttgcaacttataatcagaagcaggtgattaatatgctcagcagtttcctcatgagcttcattcagaagggtatgtatctagctg |
23390330 |
T |
|
| Q |
814 |
atttggaattggactttaacttctttttaccattatgtgtttaaattaacactaacggtcgtaacatatcctttaaattatggccactttaattagaaaa |
913 |
Q |
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| T |
23390329 |
atttggaattggactttaacttctttttaccattatgtgtttaaattaacactaacggtcgtaacatatcctttaaattatggccactttaattagaaaa |
23390230 |
T |
|
| Q |
914 |
atgctatatcgagagaaaaat-atcatgaatagagccacaaactttgattggatttttcaca-cacta-cccga-cgttagat-catct-caacgaactc |
1007 |
Q |
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| T |
23390229 |
atgctatatcgagagaaaaataatcacgaatagagcgacaaactttgattgaatttttcacaccactaccccgaccgttagatccatctccaacgaactc |
23390130 |
T |
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| Q |
1008 |
tcgcat-cttcgtcagatttcac-ggattagttca-cga--tca-gtac-atgactttttcacacattttct |
1072 |
Q |
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| T |
23390129 |
gcgcatccttcgtcagattccacgggattagttcaccgaattcaggtacaatgactttttcacacattttct |
23390058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 157 - 586
Target Start/End: Complemental strand, 23390965 - 23390533
Alignment:
| Q |
157 |
ctctggattgcagaacagaactttctgttctacaaccatttttattagtagtactgattcttcatatatacatatgttgaaattgaaaagcaaattctgt |
256 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23390965 |
ctctgaattgtagaacagaactttctgttctacaaccatttttattagtagtactgattcttcatatatacatatgttgaaattgaaaagcaaattcttt |
23390866 |
T |
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| Q |
257 |
ttgcattcttttctgtaatgcaggaattaatcaagtataaagtgcttctcatcccttctattagtatatatgaaagaagaatagaagtttggtatgtcaa |
356 |
Q |
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| T |
23390865 |
ttgcattcttttctgtaatgcaggtattaatcaagcataaagtgcttctcatcccttctattagtatatatgaaagaagaatagaagtttggtatgtcaa |
23390766 |
T |
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| Q |
357 |
aatcagtgtcaacttcattagctaattaaattaagttaaaggaggtaattaaaatctgtgtctctcttctttttat--tcttatattatcatttgtagga |
454 |
Q |
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| T |
23390765 |
aatcagtgtcaacttcattagctatttaaattaagttaaaggaggtaattaaaatctgtgtctctcttctttttcttctcttatattatcatttgtagga |
23390666 |
T |
|
| Q |
455 |
ttttaaaaaatggtttgtaaccataatttgggttgtgacatcaacctttttaatgtctctgcattcgtaacatgtgcattagccacatttttccataaga |
554 |
Q |
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| T |
23390665 |
ttttaaaaaatagtttgtaaccgtaatttggg-tgtgacatcaaactttttaatgtctctgcatccgcaactagtatattagccgcatttttccgtaata |
23390567 |
T |
|
| Q |
555 |
--aaggattgtgactgttgtggtcgtgaccgcaa |
586 |
Q |
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||||||||||| ||||| | ||||||||||| |
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| T |
23390566 |
tcaaggattgtgattgttgctgccgtgaccgcaa |
23390533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 23391114 - 23391036
Alignment:
| Q |
8 |
ataatgaatatgaaaatattcatgttcaagattttcaagatttacaagattttcaagatgaagaggtatcactgtggaa |
86 |
Q |
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| T |
23391114 |
ataatgaatatgaaaatattcatgttcaagactttcaagatttacaagattttcaagatgaagaggtatcactgtggaa |
23391036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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