View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786-Insertion-5 (Length: 768)
Name: NF5786-Insertion-5
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 52717631 - 52718050
Alignment:
| Q |
8 |
aaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52717631 |
aaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagat |
52717730 |
T |
|
| Q |
108 |
gccaccagcaagtgtgatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttgg |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52717731 |
gccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttgg |
52717830 |
T |
|
| Q |
208 |
tctcttgtatcatttaggtatttcagtcatatataccaatccccnnnnnnntcttcaatctattaatttagtaactgctaattaatgatgtgcatgcatg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52717831 |
tctcttgtatcatttaggtatttcagtcatatataccaatccccaaaaaaatcttcaatctattaatttagtaactgctaattaatgatgttcatgcatg |
52717930 |
T |
|
| Q |
308 |
caggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggtacttgtcaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52717931 |
caggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggtacttttcaa |
52718030 |
T |
|
| Q |
408 |
ttccaaacattatattctcc |
427 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
52718031 |
ttccaaacattatattctcc |
52718050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 493 - 768
Target Start/End: Original strand, 52718090 - 52718357
Alignment:
| Q |
493 |
gcaggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtga |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52718090 |
gcaggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtga |
52718189 |
T |
|
| Q |
593 |
ttgcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggtatgtgaaattaaattcagtttatcaattaatcaaaa |
692 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52718190 |
ttgcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggtatgtgaaattaaattcagttt--------atcaaaa |
52718281 |
T |
|
| Q |
693 |
tgcttaataaattcagtttgttaccataattatgtttgattttaatttgcaggctgcacttccccaaggtattgtt |
768 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52718282 |
tgcttaatatattcagtttgttaccataattttgtttgattttaatttgcaggctgcacttccccaaggtattgtt |
52718357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 52712043 - 52712254
Alignment:
| Q |
17 |
ttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagatgccaccagc |
116 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | ||||||||||||||| |
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| T |
52712043 |
ttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaacagatgccaccagc |
52712142 |
T |
|
| Q |
117 |
aagtgtgatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttggtctcttgta |
216 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| || |
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| T |
52712143 |
aagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgtttggtctcttata |
52712242 |
T |
|
| Q |
217 |
tcatttaggtat |
228 |
Q |
| |
|
|||||| ||||| |
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|
| T |
52712243 |
tcatttgggtat |
52712254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 495 - 656
Target Start/End: Original strand, 52712438 - 52712599
Alignment:
| Q |
495 |
aggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtgatt |
594 |
Q |
| |
|
|||| ||||||||| ||||| |||||||||||| || |||| ||| | ||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
52712438 |
aggtttgttcatgggattacaacctaagctgatttcacgtgggaaaaaaattgcaacatattctatggctgtaaggttcttggtcggtccagctgtgatt |
52712537 |
T |
|
| Q |
595 |
gcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggt |
656 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
52712538 |
gcggcaacctcgttagcagttggtctccgtggagttctcttacatgttgcaattgttcaggt |
52712599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 52712349 - 52712441
Alignment:
| Q |
306 |
tgcaggtttcacattgaaatgccatccattgtaaaaggttccatctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt |
398 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| ||||||||||||||||| ||| || |||||||||||||||||||||| ||||||||| |
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| T |
52712349 |
tgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatactatctaatactggtcttggaatggccatgtttagtctaggt |
52712441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 33103778 - 33103828
Alignment:
| Q |
348 |
atctcaatactgtctgatgctggtcttggaatggccatgttcagtctaggt |
398 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
33103778 |
atctccatactgtctgatgctggtcttggaatggctatgttcagtttaggt |
33103828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 25040218 - 25040285
Alignment:
| Q |
106 |
atgccaccagcaagtgtgatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcc |
173 |
Q |
| |
|
||||||||||| |||||||||||||| || || | || ||||||||||||||||| ||||||||||| |
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|
| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatcc |
25040285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 354 - 388
Target Start/End: Complemental strand, 10837043 - 10837009
Alignment:
| Q |
354 |
atactgtctgatgctggtcttggaatggccatgtt |
388 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| |
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|
| T |
10837043 |
atactgtctgatgctggtcttggaatggctatgtt |
10837009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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