View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786-Insertion-8 (Length: 445)
Name: NF5786-Insertion-8
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 99 - 445
Target Start/End: Complemental strand, 36298781 - 36298441
Alignment:
| Q |
99 |
ccatgcgagttttgggttgtttgtgttttggtgaatggattttattagttttcttgttgtttcttccatgttttcgaggttgtttggttttgagatttga |
198 |
Q |
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| T |
36298781 |
ccatgcgagttttgggttgtttgtgttttggtgaatggattttattagttttcttgttgtttcttccatgttttcgaggttgtttggttttgagatttga |
36298682 |
T |
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| Q |
199 |
gtttagcactactattatagcttaattgaacatgtcacagtgaaggtttgattccwaagcagtttcaactatttagcgcctaatttgtttgtttttggcg |
298 |
Q |
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| T |
36298681 |
gtttagcactactattatagcttaattgaacatgtcacagtgaaggtttgattccaaagcagtttcaactatttagcgcctaatttgtttgtttttggcg |
36298582 |
T |
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| Q |
299 |
gtgtgtgcattgcaaacgtgtgttcatttatgtttgtctaatgtctgaatgtgactgatgatgcaatcagatagaccttcactttgccccgtttggattg |
398 |
Q |
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| T |
36298581 |
gtgtgtgcattgcaaacgtgtgttcatttatgtttgtctaatgtctgaatgtgactgatgatgcaatcagatag------actttgccctgtttggattg |
36298488 |
T |
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| Q |
399 |
tacttataaaaaataatctacgcaaataaataaatttttatattaat |
445 |
Q |
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| T |
36298487 |
tacttaaaaaaaataatctaggcaaataaataaacttttatattaat |
36298441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 445
Target Start/End: Complemental strand, 36266398 - 36266340
Alignment:
| Q |
387 |
ccgtttggattgtacttataaaaaataatctacgcaaataaataaatttttatattaat |
445 |
Q |
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| T |
36266398 |
ccgtttggattgagcttatgaaaaataatttatgcaaataaataagtttttattttaat |
36266340 |
T |
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