View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_high_1 (Length: 665)

Name: NF5786_high_1
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_high_1
NF5786_high_1
[»] chr2 (1 HSPs)
chr2 (13-649)||(40718840-40719475)


Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 13 - 649
Target Start/End: Original strand, 40718840 - 40719475
Alignment:
Q  13 aatatttcagaccaaacttaaccaattgttccaagggacacaaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattg 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40718840 aatatttcagaccaaacttaaccaattgttccaagggacactaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattg 40718939  T
Q  113 gcgggttttctcaaaaatgaaaataaattggcgggtgcgtgggtgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatggcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40718940 gcgggttttctcaaaaatgaaaataaattggcgggtgcgtggttgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatagcat 40719039  T
Q  213 aatttacatatnnnnnnnttgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgctttccatttgac 312  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40719040 aatttacatataaaaaaattgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgctt-ccatttgac 40719138  T
Q  313 caataccaagttggtttcaatgtgtaattacttacgaagtgagaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtactta 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719139 caataccaagttggtttcaatgtgtaattacttacgaagtgaaaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtactta 40719238  T
Q  413 tgtattttatctgtaagattttcctcaaccgtagttattgagttattagtagtacaaagcataattgaaatgaaaaaaccaaattattgtgacacctcaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719239 tgtattttatctgtaagattttcctcaaccgtagttattgagttattagtagtacaaagcataattgaaatgaaaaaaccaaattattgtgacacctcaa 40719338  T
Q  513 acatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttcaactgcatccgaacattctatggccagcagttg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719339 acatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttcaactgcatccgaacattctatggccagcagttg 40719438  T
Q  613 aatcctcacattgaacactatccaccctaactaaaac 649  Q
    |||||||||||||||||||||||||||||||||||||    
T  40719439 aatcctcacattgaacactatccaccctaactaaaac 40719475  T

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