View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_13 (Length: 421)
Name: NF5786_high_13
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Original strand, 38347774 - 38348167
Alignment:
| Q |
11 |
cacagacaaattatttatttttactattacacaaaagaaaattaaaatggtgattctcccattaaatattacatttattaaatatacttatctaccatag |
110 |
Q |
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| T |
38347774 |
cacagacaaattatttatttttactactacgcaaaagaaaattaaaatggtgattctcccattaaatattacatttattaaatatacttatctaccatag |
38347873 |
T |
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| Q |
111 |
actcttacaatgtggtgaagcaaagtttggattccgactgaaagaaatactcaaatttagtacgtagtgccccatgtttgggttgaccttccgtctttcg |
210 |
Q |
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| T |
38347874 |
actcttacaatgtggtgaagcaaagtttggattccgaccgaaagaaatactcaaatttagtacgtagtgccccatgtttgggttgaccttccgtctttcg |
38347973 |
T |
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| Q |
211 |
cggcattacccactccttccatccacgcgtgcattgcttccttagaatgcacctccatgccaatagttgttttggttgggagggctataaacatggaaca |
310 |
Q |
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| T |
38347974 |
cggcattacccactccttccatccacgagtgcattgcttccttagaatgcacctccatgccaatagttgttttggttgggagggctataaacatggaaca |
38348073 |
T |
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| Q |
311 |
tgggtaaaaatgtcaaattttcaagttctacttaactttaattgtttctaacacctctacgatctttgtggacctcaatagacatgagaaagat |
404 |
Q |
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| T |
38348074 |
tgggtaaaaatgtcaaattttcaagttctacttaactttaattgtttctaacacctctacgatctttgtggacctcaatagacatgagaaagat |
38348167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 10812477 - 10812545
Alignment:
| Q |
295 |
ctataaacatggaacatgggtaaaaatgtcaaattttcaagttctacttaactttaattgtttctaacac |
364 |
Q |
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| T |
10812477 |
ctataaatatgaaacatgagtaaaa-tgtcaagttgtcaagttccatttaactttgattgtttctaacac |
10812545 |
T |
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