View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_high_14 (Length: 418)
Name: NF5786_high_14
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 44380112 - 44379712
Alignment:
| Q |
1 |
atcactctttcatattcatttatacgctccaacacttccctcctttaatgtttcaatattttcttctgtctctgacattgtttgagtactatgtatagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44380112 |
atcactctttcatattcatttatacgctccaacacttccctcctttaatgtttcaatattttcttctgtctctgacattgtttgagtactatgtatagtt |
44380013 |
T |
|
| Q |
101 |
atgtgaggtggttttttcctgtgatgtgtttctgagcnnnnnnnnnnnnnnnnttaatgcaaagt-gtgttctgtgttttataggagatgacagagacag |
199 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44380012 |
acgtgaggtggttttttcctgtgatgtgtttctgagcgtgtgtgtgtgtgtgtttaatgcaaagttgtgttctgtgttttataggagatgacagagacag |
44379913 |
T |
|
| Q |
200 |
ataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaatgttagtttcaatggacactaatggaagattagttgcaggatcaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379912 |
ataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaatgttagtttcaatggacactaatggaagattagttgcaggatcaca |
44379813 |
T |
|
| Q |
300 |
taacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgtaattccattttctttatctcaaacttgtttcttgtttaatacttgc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44379812 |
taacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgtaattccattttctttatctcaaacttgtttcttgtttaatacttgc |
44379713 |
T |
|
| Q |
400 |
t |
400 |
Q |
| |
|
| |
|
|
| T |
44379712 |
t |
44379712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 28846937 - 28846887
Alignment:
| Q |
259 |
gtttcaatggacactaatggaagattagttgcaggatcacataacaggaat |
309 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||| |||||||||| |||| |
|
|
| T |
28846937 |
gtttcaatggacactaatgggagactaattgcagggtcacataacatgaat |
28846887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University