View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_high_17 (Length: 405)

Name: NF5786_high_17
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_high_17
NF5786_high_17
[»] chr3 (8 HSPs)
chr3 (1-405)||(37146512-37146916)
chr3 (360-405)||(4521536-4521581)
chr3 (360-405)||(26001289-26001334)
chr3 (360-405)||(28146483-28146528)
chr3 (360-405)||(28146594-28146639)
chr3 (360-405)||(29384778-29384823)
chr3 (360-405)||(36790154-36790199)
chr3 (360-405)||(44568677-44568722)
[»] chr1 (8 HSPs)
chr1 (366-405)||(51369416-51369455)
chr1 (363-405)||(32989992-32990034)
chr1 (359-405)||(49982721-49982767)
chr1 (360-405)||(13216363-13216408)
chr1 (360-405)||(35912899-35912944)
chr1 (360-405)||(41568539-41568584)
chr1 (360-405)||(43536971-43537016)
chr1 (361-405)||(31930966-31931010)
[»] chr2 (12 HSPs)
chr2 (368-402)||(18250997-18251031)
chr2 (360-402)||(37425484-37425526)
chr2 (360-405)||(7366601-7366646)
chr2 (360-405)||(8504293-8504338)
chr2 (360-405)||(15176437-15176482)
chr2 (360-405)||(16718730-16718775)
chr2 (360-405)||(28318308-28318353)
chr2 (360-405)||(33429227-33429272)
chr2 (360-405)||(36428774-36428819)
chr2 (360-405)||(41184581-41184626)
chr2 (360-405)||(43359198-43359243)
chr2 (360-404)||(4108401-4108445)
[»] scaffold0648 (1 HSPs)
scaffold0648 (360-405)||(1368-1413)
[»] scaffold0325 (1 HSPs)
scaffold0325 (360-405)||(1480-1525)
[»] scaffold0271 (1 HSPs)
scaffold0271 (360-405)||(15748-15793)
[»] chr8 (10 HSPs)
chr8 (360-405)||(2880196-2880241)
chr8 (360-405)||(5982453-5982498)
chr8 (360-405)||(17069500-17069545)
chr8 (360-405)||(17578728-17578773)
chr8 (360-405)||(32071507-32071552)
chr8 (360-405)||(36569916-36569961)
chr8 (360-405)||(40824558-40824603)
chr8 (360-405)||(40972332-40972377)
chr8 (360-405)||(44637187-44637232)
chr8 (361-405)||(11110470-11110514)
[»] chr7 (8 HSPs)
chr7 (360-405)||(3228335-3228380)
chr7 (360-405)||(8648304-8648349)
chr7 (360-405)||(11640389-11640434)
chr7 (360-405)||(19345706-19345751)
chr7 (360-405)||(25411893-25411938)
chr7 (360-405)||(31311441-31311486)
chr7 (360-405)||(45701302-45701347)
chr7 (360-405)||(49079347-49079392)
[»] chr6 (4 HSPs)
chr6 (360-405)||(926635-926680)
chr6 (360-405)||(3954171-3954216)
chr6 (361-405)||(14872593-14872637)
chr6 (361-405)||(21998709-21998753)
[»] chr5 (4 HSPs)
chr5 (360-405)||(10118511-10118556)
chr5 (360-405)||(16602629-16602674)
chr5 (360-405)||(18480162-18480207)
chr5 (368-400)||(3278811-3278843)
[»] chr4 (9 HSPs)
chr4 (360-405)||(6882800-6882845)
chr4 (368-401)||(10473823-10473856)
chr4 (360-405)||(17370543-17370588)
chr4 (360-405)||(30168365-30168410)
chr4 (360-405)||(32882362-32882407)
chr4 (360-405)||(48207172-48207217)
chr4 (360-405)||(52415067-52415112)
chr4 (95-139)||(25710777-25710821)
chr4 (361-405)||(52324232-52324276)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 37146916 - 37146512
Alignment:
Q  1 tttggttcttggtttcgttctgtgttgacggtatgtccatacgccagttttttgaactctggttagtgcttcaaatgttttcaaatcatctctcttttgc 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37146916 tttggttcttggtttcgttctgtgtcgacggtatgtccatacgccagttttttgaactctggttagtgcttcaaatgttttcaaatcatctctcttttgc 37146817  T
Q  101 aatctggtttcgctcccatacgcgagtgtgttggattgtcctcatgaccgcggtttgtttgttgggatgaactaggggttgatctactagtgttatttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37146816 aatctggtttcgctcccatacgcgagtgtgttggattgtcctcatgaccgcggtttgtttgttgggatgaactaggggttgatctactagtgttatttta 37146717  T
Q  201 ttcgtatttattactcgtttgggttgaactacacatttatgtagactcactaggtcaggtcttttgctcccgnnnnnnnngtacgtctttactttcatta 300  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  37146716 ttcgtatttattacttgtttgggttggactacacatttatgtagactcactaggtcaggtcttttgctcccgttttttttgtacgtctttactttcatta 37146617  T
Q  301 atctaatacttgtttgctttnnnnnnnttaatagctaaatgaatttttgttaaattattttattctctatcatttacaataataataactaaatcttatt 400  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37146616 atctaatacttgtttgctttaaaaaaattaatagctaaatgaatttttgttaaattattttattctctatcatttacaataataataactaaatcttatt 37146517  T
Q  401 tacca 405  Q
    |||||    
T  37146516 tacca 37146512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 4521581 - 4521536
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  4521581 ttattttctatcattgacaattataataattaaatcttatttacca 4521536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 26001289 - 26001334
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  26001289 ttattttctatcattgacaattataataattaaatcttatttacca 26001334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 28146528 - 28146483
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  28146528 ttattttctatcattgacaattataataattaaatcttatttacca 28146483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 28146639 - 28146594
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  28146639 ttattttctatcattgacaattataataattaaatcttatttacca 28146594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 29384778 - 29384823
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  29384778 ttattttctatcattgacaattataataattaaatcttatttacca 29384823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 36790199 - 36790154
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  36790199 ttattttctatcattgacaattataataattaaatcttatttacca 36790154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 44568677 - 44568722
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  44568677 ttattttctatcattgacaattataataattaaatcttatttacca 44568722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 51369416 - 51369455
Alignment:
Q  366 tctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  51369416 tctatcatttataattataataactaaatcttatttacca 51369455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 32989992 - 32990034
Alignment:
Q  363 ttctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||    
T  32989992 ttctctataatttaaaattataataactaaatcttatttacca 32990034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 49982767 - 49982721
Alignment:
Q  359 tttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  49982767 tttattttctatcattgacaattataataattaaatcttatttacca 49982721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 13216408 - 13216363
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  13216408 ttattttctatcattgacaattataataattaaatcttatttacca 13216363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 35912944 - 35912899
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  35912944 ttattttctatcattgacaattataataattaaatcttatttacca 35912899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 41568539 - 41568584
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  41568539 ttattttctatcattgacaattataataattaaatcttatttacca 41568584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 43536971 - 43537016
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  43536971 ttattttctatcattgacaattataataattaaatcttatttacca 43537016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 31931010 - 31930966
Alignment:
Q  361 tattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||| |||||||| || ||| ||||||||||||||||||||||||    
T  31931010 tattttctatcatctataattataataactaaatcttatttacca 31930966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 18250997 - 18251031
Alignment:
Q  368 tatcatttacaataataataactaaatcttattta 402  Q
    |||||||||||||| ||||||||||||||||||||    
T  18250997 tatcatttacaatattaataactaaatcttattta 18251031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 402
Target Start/End: Complemental strand, 37425526 - 37425484
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttattta 402  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||    
T  37425526 ttattttctatcatttacaattataacaactaaatcttattta 37425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 7366601 - 7366646
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  7366601 ttattttctatcattgacaattataataattaaatcttatttacca 7366646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 8504338 - 8504293
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  8504338 ttattttctatcattgacaattataataattaaatcttatttacca 8504293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 15176437 - 15176482
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| |||||||||| |||| ||||||| ||||||||||||||||    
T  15176437 ttattttctatcatttgcaattataataattaaatcttatttacca 15176482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 16718730 - 16718775
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  16718730 ttattttctatcattgacaattataataattaaatcttatttacca 16718775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 28318353 - 28318308
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  28318353 ttattttctatcattgacaattataataattaaatcttatttacca 28318308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 33429227 - 33429272
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  33429227 ttattttctatcattgacaattataataattaaatcttatttacca 33429272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 36428819 - 36428774
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  36428819 ttattttctatcattgacaattataataattaaatcttatttacca 36428774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 41184581 - 41184626
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  41184581 ttattttctatcattaacaattataataattaaatcttatttacca 41184626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 43359198 - 43359243
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  43359198 ttattttctatcattgacaattataataattaaatcttatttacca 43359243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 4108401 - 4108445
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacc 404  Q
    ||||| ||||||||| ||||| ||||||| |||||||||||||||    
T  4108401 ttattttctatcattgacaattataataattaaatcttatttacc 4108445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 1368 - 1413
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  1368 ttattttctatcattgacaattataataattaaatcttatttacca 1413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 1525 - 1480
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  1525 ttattttctatcattgacaattataataattaaatcttatttacca 1480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 15748 - 15793
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  15748 ttattttctatcattgacaattataataattaaatcttatttacca 15793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 2880241 - 2880196
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  2880241 ttattttctatcattgacaattataataattaaatcttatttacca 2880196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 5982498 - 5982453
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  5982498 ttattttctatcattgacaattataataattaaatcttatttacca 5982453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 17069545 - 17069500
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  17069545 ttattttctatcattgacaattataataattaaatcttatttacca 17069500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 17578728 - 17578773
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  17578728 ttattttctatcattgacaattataataattaaatcttatttacca 17578773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 32071552 - 32071507
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  32071552 ttattttctatcattgacaattataataattaaatcttatttacca 32071507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 36569961 - 36569916
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  36569961 ttattttctatcattgacaattataataattaaatcttatttacca 36569916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 40824558 - 40824603
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  40824558 ttattttctatcattaacaattataataattaaatcttatttacca 40824603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 40972377 - 40972332
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  40972377 ttattttctatcattgacaattataataattaaatcttatttacca 40972332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 44637232 - 44637187
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  44637232 ttattttctatcattgacaattataataattaaatcttatttacca 44637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 11110470 - 11110514
Alignment:
Q  361 tattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||| ||||||||||||||| ||||||||||||| || |||||||    
T  11110470 tattttctatcatttacaattataataactaaatattctttacca 11110514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 3228335 - 3228380
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  3228335 ttattttctatcattgacaattataataattaaatcttatttacca 3228380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 8648349 - 8648304
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  8648349 ttattttctatcattgacaattataataattaaatcttatttacca 8648304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 11640389 - 11640434
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  11640389 ttattttctatcattgacaattataataattaaatcttatttacca 11640434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 19345706 - 19345751
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  19345706 ttattttctatcattgacaattataataattaaatcttatttacca 19345751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 25411938 - 25411893
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  25411938 ttattttctatcattgacaattataataattaaatcttatttacca 25411893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 31311441 - 31311486
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  31311441 ttattttctatcattgacaattataataattaaatcttatttacca 31311486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 45701347 - 45701302
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  45701347 ttattttctatcattgacaattataataattaaatcttatttacca 45701302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 49079347 - 49079392
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  49079347 ttattttctatcattgacaattataataattaaatcttatttacca 49079392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 926635 - 926680
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  926635 ttattttctatcattgacaattataataattaaatcttatttacca 926680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 3954216 - 3954171
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  3954216 ttattttctatcattgacaattataataattaaatcttatttacca 3954171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 14872637 - 14872593
Alignment:
Q  361 tattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  14872637 tattttctatcattgacaattataataattaaatcttatttacca 14872593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 21998709 - 21998753
Alignment:
Q  361 tattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  21998709 tattttctatcattgacaattataataattaaatcttatttacca 21998753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 10118556 - 10118511
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  10118556 ttattttctatcattgacaattataataattaaatcttatttacca 10118511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 16602674 - 16602629
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  16602674 ttattttctatcattgacaattataataattaaatcttatttacca 16602629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 18480162 - 18480207
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  18480162 ttattttctatcattgacaattataataattaaatcttatttacca 18480207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 3278811 - 3278843
Alignment:
Q  368 tatcatttacaataataataactaaatcttatt 400  Q
    ||||||||||||| |||||||||||||||||||    
T  3278811 tatcatttacaattataataactaaatcttatt 3278843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 6882845 - 6882800
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  6882845 ttattttctatcattgacaattataataattaaatcttatttacca 6882800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 10473856 - 10473823
Alignment:
Q  368 tatcatttacaataataataactaaatcttattt 401  Q
    ||||||||||||| ||||||||||||||||||||    
T  10473856 tatcatttacaattataataactaaatcttattt 10473823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 17370588 - 17370543
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  17370588 ttattttctatcattgacaattataataattaaatcttatttacca 17370543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 30168410 - 30168365
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  30168410 ttattttctatcattgacaattataataattaaatcttatttacca 30168365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 32882362 - 32882407
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  32882362 ttattttctatcattgacaattataataattaaatcttatttacca 32882407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 48207172 - 48207217
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  48207172 ttattttctatcattgacaattataataattaaatcttatttacca 48207217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 52415067 - 52415112
Alignment:
Q  360 ttattctctatcatttacaataataataactaaatcttatttacca 405  Q
    ||||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  52415067 ttattttctatcattgacaattataataattaaatcttatttacca 52415112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 25710777 - 25710821
Alignment:
Q  95 ttttgcaatctggtttcgctcccatacgcgagtgtgttggattgt 139  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||||    
T  25710777 ttttgcaacttggtttcgctcccgtacgcgggtgtgttggattgt 25710821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 52324276 - 52324232
Alignment:
Q  361 tattctctatcatttacaataataataactaaatcttatttacca 405  Q
    |||| ||||||||| ||||| ||||||| ||||||||||||||||    
T  52324276 tattttctatcattgacaattataataattaaatcttatttacca 52324232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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