View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_30 (Length: 294)
Name: NF5786_high_30
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 50012086 - 50011892
Alignment:
| Q |
1 |
gtggtgggtgggaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatc |
100 |
Q |
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||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
50012086 |
gtggtaggtgggaatggaaaaaagatgctatggtgtgggagacatataataaaatttaattcaacctcaagatctaacttataatcacatgtggtccatc |
50011987 |
T |
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| Q |
101 |
atgggaagattttcacctttcccatgtgaaaaggcacctggttttaaaactatgaacatggttgtaactaaaataaataaatctacctctggttt |
195 |
Q |
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| T |
50011986 |
atgggaagattttcacctttcccatatgaaaaggcacctggttttaaaactatgaatatggttgtaactaaaataaataaatctacctctggttt |
50011892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 21444378 - 21444515
Alignment:
| Q |
1 |
gtggtgggtgggaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21444378 |
gtggtgggtgggaatggaaaagagatgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtttatc |
21444477 |
T |
|
| Q |
101 |
atgggaagattttcacctttcccatgtgaaaaggcacc |
138 |
Q |
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| T |
21444478 |
atgggaagattttcacctttcccatgtgaaaaggcacc |
21444515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42066261 - 42066144
Alignment:
| Q |
1 |
gtggtgggtgggaatggaaaagagatgttatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatc |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
42066261 |
gtggtgggtgggaatggaaaagagatgctatggtgtgggagacatataataaaatttaatacaacctcaagatctaatctataatcacatgtggtctatc |
42066162 |
T |
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| Q |
101 |
atgggaagattttcacct |
118 |
Q |
| |
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||| |||||||||||||| |
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| T |
42066161 |
atgagaagattttcacct |
42066144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 42067027 - 42067137
Alignment:
| Q |
29 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
128 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42067027 |
tatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
42067126 |
T |
|
| Q |
129 |
aaaaggcacct |
139 |
Q |
| |
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||| ||||||| |
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| T |
42067127 |
aaatggcacct |
42067137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 21443610 - 21443508
Alignment:
| Q |
29 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
128 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21443610 |
tatggtgtgggagacatatgataaaatttaatacaacctcaaaatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
21443511 |
T |
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| Q |
129 |
aaa |
131 |
Q |
| |
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||| |
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| T |
21443510 |
aaa |
21443508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 50012848 - 50012958
Alignment:
| Q |
29 |
tatggtgtgggagacatataataaaatttaatacaacctcaagatctaacctataatcacatgtggtccatcatgggaagattttcacctttcccatgtg |
128 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50012848 |
tatggtgtgggagacatatgataaaatttaattcaacctcaaaatctaacctataatcacatgtggtctatcatgggaagattttcacctttcccatgtg |
50012947 |
T |
|
| Q |
129 |
aaaaggcacct |
139 |
Q |
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||| ||||||| |
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| T |
50012948 |
aaatggcacct |
50012958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 9124408 - 9124445
Alignment:
| Q |
102 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
139 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
9124408 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
9124445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 5929227 - 5929190
Alignment:
| Q |
102 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
139 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
5929227 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
5929190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 42843921 - 42843884
Alignment:
| Q |
102 |
tgggaagattttcacctttcccatgtgaaaaggcacct |
139 |
Q |
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||||||| |||||||||||||||||||||| ||||||| |
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| T |
42843921 |
tgggaaggttttcacctttcccatgtgaaatggcacct |
42843884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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