View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_high_33 (Length: 280)

Name: NF5786_high_33
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_high_33
NF5786_high_33
[»] chr3 (11 HSPs)
chr3 (20-280)||(5827936-5828196)
chr3 (18-280)||(5848665-5848927)
chr3 (20-277)||(20343674-20343931)
chr3 (20-245)||(5802303-5802528)
chr3 (18-210)||(5503042-5503234)
chr3 (18-181)||(5525879-5526042)
chr3 (18-280)||(5455052-5455314)
chr3 (25-181)||(5484842-5484998)
chr3 (18-210)||(5490229-5490421)
chr3 (18-280)||(5853966-5854228)
chr3 (25-245)||(5446500-5446717)
[»] chr6 (1 HSPs)
chr6 (25-245)||(25809095-25809312)
[»] chr2 (3 HSPs)
chr2 (25-196)||(34217119-34217290)
chr2 (25-171)||(34194286-34194432)
chr2 (25-171)||(34205719-34205865)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 5828196 - 5827936
Alignment:
Q  20 ttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828196 ttgttaaaccaaagtaagcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 5828097  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgt 219  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828096 caaggctcaagttcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgt 5827997  T
Q  220 tctcctctgacacccaccagaccaattcgacgacttccattttgtttaaaattttggcatg 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5827996 tctcctccgacacccaccagaccaattcgacgacttccattttgtttgaaattttggcatg 5827936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 5848927 - 5848665
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||| |||| ||||||||||||    
T  5848927 tgttgttaaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagtacagtttttcaagcacagtgtcttacattc 5848828  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatttt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || | ||||||||||||    
T  5848827 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcagaaagccatccccagtgtgacaattcaatttt 5848728  T
Q  218 gttctcctctgacacccaccagaccaattcgacgacttccattttgtttaaaattttggcatg 280  Q
    ||||||||  | |||||||||||||||||| | ||||||||||||| || |||||||||||||    
T  5848727 gttctcctgaggcacccaccagaccaattcaatgacttccattttggttgaaattttggcatg 5848665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 20343674 - 20343931
Alignment:
Q  20 ttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||  |||||||||||||| |||||  ||| |||||||||||| | |||||||||||||    
T  20343674 ttgtcaaaccaaagtaagcaaccactcccaccatctctgatatctaaatttgcatatgcagtgcaattacaatttttcaaacacgtcgtcttacattcct 20343773  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgt 219  Q
     |||||||||||||||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||||    
T  20343774 gaaggctcaagctcttgtcataccatgatgccgacgtgtctggcaacttcatgtttgtgtacttcaaaaatccatctccattgagacaattcaattttgt 20343873  T
Q  220 tctcctctgacacccaccagaccaattcgacgacttccattttgtttaaaattttggc 277  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||||| || ||||||||||    
T  20343874 tctcctcagacacccgccagaccaatccgatgacttccattttgattgaaattttggc 20343931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 5802528 - 5802303
Alignment:
Q  20 ttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcct 119  Q
    |||| ||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  5802528 ttgttaaaccaaagtaagcagccactaccaccatccctgatatctgaatttgcatatgcggtgcaagaacagtttttcaaacacattgtcttacattctt 5802429  T
Q  120 caaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgt 219  Q
    ||||||| |||||||||| |||  | |||| ||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  5802428 caaggctaaagctcttgttataatacgatgatgatgtatctggtaacttcatgtttgtgtacttcaaaaagccatcaccattgagacaattcaattttgt 5802329  T
Q  220 tctcctctgacacccaccagaccaat 245  Q
    ||||||| ||||||||||||||||||    
T  5802328 tctcctcagacacccaccagaccaat 5802303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 5503042 - 5503234
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5503042 tgttgtcaaaccaaagtaagcagccactcccaccatctctgatatctgaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattc 5503141  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5503142 ctcaaggctcaagctcctgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatt 5503234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 5525879 - 5526042
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5525879 tgttgttaaaccaaagtaagcagccactcccaccatctctgacatctgaatttgcatatgcagtgcaagaacaatttttcaaacacattgtcttacattc 5525978  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 181  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5525979 ctcgaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgtttgtgtac 5526042  T

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Target: chr3; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5455052 - 5455314
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  || ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5455052 tgttgtgaaaccaaagtatgcagccactcccatcatctctgatatctaaagttgcatatgcattgcaagtacagtttttcaaacacattgtcttacattc 5455151  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatttt 217  Q
    ||||||||| ||| | |||||| |||| |||| |||||| ||||||||||||||| ||||||||   ||||| ||||| |||| ||| ||||| || | |    
T  5455152 ctcaaggcttaaggttttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgt 5455251  T
Q  218 gttctcctctgacacccaccagaccaattcgacgacttccattttgtttaaaattttggcatg 280  Q
    ||| ||||   |||||||||||||||||  || |||| ||| |||| || |||||||||||||    
T  5455252 gttttccttacacacccaccagaccaatctgatgactcccactttggttgaaattttggcatg 5455314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 5484842 - 5484998
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  5484842 aaaccaaagtaagcagccactcccaccatctctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacattgtcttacattccttaagg 5484941  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtac 181  Q
    ||||||||||||||| |||| |||| |||||| ||||||||||||||| ||||||||    
T  5484942 ctcaagctcttgtcaaaccacgatgctgacgtatctggcaacttcatgtttgtgtac 5484998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 5490229 - 5490421
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5490229 tgttgttaaaccaaagtatgcagccactcccaccatctttgatatctgaatttgcatatgcagtgcaagtacagtttttcaaacacattgtcttacattc 5490328  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaatt 210  Q
    |||||||||||||||||||| |||  | |||| ||| || ||||||||||||||| ||||||||   ||||| ||||| |||| ||| |||||    
T  5490329 ctcaaggctcaagctcttgttataatacgatgatgatgtatctggcaacttcatgtttgtgtacggtaaaaatccatcgccatggagacaatt 5490421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 5854228 - 5853966
Alignment:
Q  18 tgttgtgaaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattc 117  Q
    |||||| ||||||||||| ||||||||| ||| ||| |||||||||  |||||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  5854228 tgttgtcaaaccaaagtaagcagccacttccaacatatctgatatctaaatttgcatatgcagtgcaagaacagtttttcaaacacactgtcatacattc 5854129  T
Q  118 ctcaaggctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaatttt 217  Q
    |||||||||||||||||||||| |||| |||| |||||||||||| ||||||||| ||| |||    ||||| ||||| |||| ||  ||||| ||  ||    
T  5854128 ctcaaggctcaagctcttgtcaaaccacgatgctgacgtgtctggtaacttcatgtttgcgtatggtaaaaacccatctccatagacacaatttaaactt 5854029  T
Q  218 gttctcctctgacacccaccagaccaattcgacgacttccattttgtttaaaattttggcatg 280  Q
    ||| ||||   |||||||||||||||||| || |||| ||| | || || |||||||||||||    
T  5854028 gttttccttacacacccaccagaccaatttgatgactcccactctggttgaaattttggcatg 5853966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 5446500 - 5446717
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    |||||| |||| |||||||||   ||||| |||||||||  || |||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  5446500 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 5446596  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgttctcc 224  Q
    |||||| |||||| |||||| |||| ||| || ||||| ||||||||| ||||||||   ||||| ||||| |||| ||| ||||| || | |||| |||    
T  5446597 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc 5446696  T
Q  225 tctgacacccaccagaccaat 245  Q
    |    ||||||||||||||||    
T  5446697 ttacgcacccaccagaccaat 5446717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 25809312 - 25809095
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    |||||| |||| |||||||||   ||||| |||||||||  || |||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  25809312 aaaccagagtaagcagccact---accatatctgatatctaaagttgcatatgcagaacaagaacagtttttcaaacacattgtcttacattcctcaagg 25809216  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatcaccattgaggcaattcaattttgttctcc 224  Q
    |||||| |||||| |||||| |||| ||| || ||||| ||||||||| ||||||||   ||||| ||||| |||| ||| ||||| || | |||| |||    
T  25809215 ctcaagatcttgttataccatgatgatgatgtatctggtaacttcatgtttgtgtacggtaaaaatccatctccatggagacaatttaaatgtgttttcc 25809116  T
Q  225 tctgacacccaccagaccaat 245  Q
    |    ||||||||||||||||    
T  25809115 ttacgcacccaccagaccaat 25809095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 34217290 - 34217119
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    ||||||||| | ||||||||| ||||||||||||| |||  |||||||||||||  | |||||||||||| | | ||| | |  || |||||| || |||    
T  34217290 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgagg 34217191  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcatgcttgtgtacttcaaaaagccatca 196  Q
     ||| |||||| | | |||||||| |||| ||||||||||||||||| ||  | | ||||||||||||||||    
T  34217190 ttcatgctcttattaaaccaagattttgatgtgtctggcaacttcattctcatatgcttcaaaaagccatca 34217119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 34194286 - 34194432
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    ||||||||| | ||||||||| ||||||||||||| |||  |||||||||||||  | |||||||||||| | | ||| | |  || |||||| || |||    
T  34194286 aaaccaaagcaagcagccacttccaccatctctgacatctaaatttgcatatgctgtacaagaacagtttctgatacagaatcgctcacattcttcgagg 34194385  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcat 171  Q
     ||| |||||| | | |||||||| |||| || ||||||||||||||    
T  34194386 ttcatgctcttattaaaccaagattttgatgtatctggcaacttcat 34194432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 34205865 - 34205719
Alignment:
Q  25 aaaccaaagtatgcagccactcccaccatctctgatatcagaatttgcatatgcaatgcaagaacagtttttcaaacacattgtcttacattcctcaagg 124  Q
    ||||||||||||||| ||||| ||||||||||||| |||  || ||||||||||  |||||  |||||||   | |||   | ||| |||||| ||||||    
T  34205865 aaaccaaagtatgcaaccacttccaccatctctgacatctaaacttgcatatgctgtgcaattacagtttcctagacaggatttctcacattcttcaagg 34205766  T
Q  125 ctcaagctcttgtcataccaagatgttgacgtgtctggcaacttcat 171  Q
    ||||  ||||| | | |||||||| |||| || || |||||||||||    
T  34205765 ctcatactcttattaaaccaagattttgatgtatcaggcaacttcat 34205719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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