View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_35 (Length: 269)
Name: NF5786_high_35
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 50012092 - 50012352
Alignment:
| Q |
1 |
ccaccaccaccaacaccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtg |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50012092 |
ccaccaccaccaataccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacatatgttcttctttctaatgtaacgtg |
50012191 |
T |
|
| Q |
101 |
ggcaagtgtttttcaaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagtta |
200 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50012192 |
ggcaagtgttttccaaatattaaagattgatttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatatttttgagcaagtta |
50012291 |
T |
|
| Q |
201 |
aatcaaaatgttcatccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50012292 |
aatcaaaatgttcatccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
50012352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 42066267 - 42066528
Alignment:
| Q |
1 |
ccaccaccaccaacaccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtg |
100 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066267 |
ccaccaccaccaataccaaatctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtg |
42066366 |
T |
|
| Q |
101 |
ggcaagtgtttttcaaatattaaagattga-nnnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagtt |
199 |
Q |
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||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066367 |
ggcaaatgttttccaaatattaaagattgattttttttttcttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagtt |
42066466 |
T |
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| Q |
200 |
aaatcaaaatgttcatccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
261 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42066467 |
aaatcaaaatgttcatccatgtaatatcaacttcatctaattatgtgcattcacttcttctc |
42066528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 21444363 - 21444106
Alignment:
| Q |
1 |
ccaccaccaccaacaccaaacctgtttatatttctttttcattcctccctctctaaaagagcttaagaaatacacatgttcttctttctaatgtaacgtg |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
21444363 |
ccaccaccaccaataccaaacctgtttatatttctttttcattcctctctctctaaaagagcttaagaaatacacatgttcttctttctgaagtaacgtg |
21444264 |
T |
|
| Q |
101 |
ggcaagtgtttttcaaatattaaagattgannnnnnnnnnnnnnnnnnnnaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagtta |
200 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444263 |
ggcaagtgttttccaaatattaaagattga---tttttttttctttttttaaataaagattgaaattttgagcaacttcaatatgtttttgagcaagtta |
21444167 |
T |
|
| Q |
201 |
aatcaaaatgttcatccctgtaatatcaacttcatctaattatgtgcattcacttcttctc |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21444166 |
aatcaaaatgttcatccctgtaatatcaacttcatctaattatctgcattcacttcttctc |
21444106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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