View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_high_41 (Length: 243)
Name: NF5786_high_41
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 45771741 - 45771530
Alignment:
| Q |
31 |
agtgataaaccgcttccaaaagatagagttaatcacatctataatctcatcaacctccaaattatttgaagaaaaaataactccgtttcacgc----ctc |
126 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
45771741 |
agtgataaaccacttccaaaagatagatttaatcacatctataatctcatcaacctccaaattatttgaagaaaaaataactccgtttcaagcaagcctc |
45771642 |
T |
|
| Q |
127 |
ccaaatctcataaattgttgcatgttaaacgagagttatattccttttggtgttttgtttgcaattactaaattaatttcatggttgtttaaaacatact |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45771641 |
ccaaatctcataaattgttgcatgttaaacgagagttatattccttttggtgttttgtttgcaattactaaattaatttcatggttgtttaaaacatact |
45771542 |
T |
|
| Q |
227 |
agtactcctatg |
238 |
Q |
| |
|
|||||||||||| |
|
|
| T |
45771541 |
agtactcctatg |
45771530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University