View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_42 (Length: 242)
Name: NF5786_high_42
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 17721557 - 17721366
Alignment:
| Q |
15 |
atgaaaaacaacatatttgtgatctgagaaatcctccgtcgccgacgttgaagactccggtggttccgatgactataatttgttttggtgatttgaaatc |
114 |
Q |
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| T |
17721557 |
atgaaaaacaacatatttgtgatctaagaaatcctccgtcgccgacgttgaagactccggtggttccgatgactataatttgttttggtgatttgaaatc |
17721458 |
T |
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| Q |
115 |
aatttgaaaactgcatcatgtttttgaaagaatgnnnnnnncgaattgcttctccagcgcaaaatcggacaaagtggtggtgatttaaagag |
206 |
Q |
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| T |
17721457 |
aatttgaaaactgcatcatgtttttaaaagaatgaaaaaaacgaattgcttctccagcgcaaaatcggacaaagtggtggtgatttaaagag |
17721366 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 47766959 - 47767012
Alignment:
| Q |
93 |
tttgttttggtgatttgaaatcaatttgaaaactgcatcatgtttttgaaagaa |
146 |
Q |
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| T |
47766959 |
tttgtttcggcgatttggaaacaaattgaaaactgcatcatgtttttgaaagaa |
47767012 |
T |
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