View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_5 (Length: 567)
Name: NF5786_high_5
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 259 - 559
Target Start/End: Original strand, 47495092 - 47495392
Alignment:
| Q |
259 |
attgactagtacgtacatttactagggagtcaatcaagaattaaaagaggaggtgggaaaggaaaatgaatatattttggtgggctatgatttcggcgaa |
358 |
Q |
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| T |
47495092 |
attgactagtacttacatttactagggagtcaatcaagaattaaaagaggaggtgggaaaggaaaatgaatatattttggtgggctatgatttcggcgaa |
47495191 |
T |
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| Q |
359 |
atgttaaagctatagtagctgtttcaaattgaaaattgaagacattgattattttgatgtatttgtggcgagattttggtcactagggtgatggattatg |
458 |
Q |
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| T |
47495192 |
attttaaagctatagtagctgtttcagattgaaaattgaagacattgattattttgatgtatttgtggcgagattttggtcactagggtgatggattatg |
47495291 |
T |
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| Q |
459 |
tgtatttgagacaatgcttttattttatgttttgaagattgttcaagggttggttggttggttggttatgtactcagtagtgagcattgagtgtgatgat |
558 |
Q |
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| T |
47495292 |
tgtatttgagacaatgcttttattttatgttttgaagattgttcaagggttggttggttggttggttatgtactcagtagtgagcattgagtgtgatgat |
47495391 |
T |
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| Q |
559 |
g |
559 |
Q |
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| T |
47495392 |
g |
47495392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 47494849 - 47495036
Alignment:
| Q |
16 |
caccaaattcttgaagtgattgattcattgaccattcttcatctatctcttcaacttccaagcacgtttctttttcatggcacaaaagatcatccatatc |
115 |
Q |
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| T |
47494849 |
caccaaattcttgatgtgattgattcattgaccattcttcatctctctcttcaacttccaagcacgtttctttttcatggcacaaaagatcatccatatc |
47494948 |
T |
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| Q |
116 |
ttttatttttccttggaaaataaatttcttattctcactagtgaaatcaataagaaagaaaaaacatcatgttgatttgattctacaa |
203 |
Q |
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| T |
47494949 |
ttttatttttccttggaaaataaatttcttattctcactagtgaaatcaataagaaagaaaaaacatcatgttgatttgattctacaa |
47495036 |
T |
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