View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_high_54 (Length: 218)
Name: NF5786_high_54
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 42848857 - 42848672
Alignment:
| Q |
15 |
cagagaatagagtaaatgcgttacagtggtgcttgcatctttgtgagcttcagaacggccaagcatagctactagttaaatgactctggtgtatccaaat |
114 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42848857 |
cagaaaatagagtaaatgtgttacagtggtgcttgcatctttgtgagcttcagaacggccaagcatagctactagttaaatgactccggtgtatccaaat |
42848758 |
T |
|
| Q |
115 |
tcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaaatttacttctagtatcataaatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42848757 |
tcatgtagtcctcctaaaatatgagtcgaaaaaatcatcaaacagaataatagtctttgaaatttacttctattatcataaatctt |
42848672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 42853435 - 42853315
Alignment:
| Q |
87 |
tagttaaatgactctg--gtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtca------aacagaataatagtctttgaaatt |
178 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||||| | ||||| |||| || |||| |||||||| ||||||||||||||| |
|
|
| T |
42853435 |
tagttaaacgactctgtagtgtatccaagttcatgtagtcctcctaaaagacgagtccaaaacattgtcaacactcaacagaat-atagtctttgaaatt |
42853337 |
T |
|
| Q |
179 |
tacttctagtatcataaatctt |
200 |
Q |
| |
|
||||||||| |||||| ||||| |
|
|
| T |
42853336 |
tacttctagaatcatacatctt |
42853315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42856986 - 42856910
Alignment:
| Q |
98 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
175 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
|
|
| T |
42856986 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42856910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 42861063 - 42860987
Alignment:
| Q |
98 |
ctctggtgtatccaaattcatgtagtcctcctaaaatatgagtcgaaaaaatcgtcaaacagaataatagtctttgaa |
175 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | ||||||||| || ||| |||| ||||| |||||||||| |
|
|
| T |
42861063 |
ctctagtgtatccaagttcatgtagtcatcctaaaagacaagtcgaaaacattgtc-aacacaataacagtctttgaa |
42860987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University