View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_high_6 (Length: 544)
Name: NF5786_high_6
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Complemental strand, 26484414 - 26483898
Alignment:
| Q |
17 |
attttttcccttctaacctgcacaaaacagaacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgcacaaaataaa |
116 |
Q |
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| T |
26484414 |
attttttcccttctaacctgcacaaaacagaacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgtacaaaataaa |
26484315 |
T |
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| Q |
117 |
tgtttatttgatttcattgtagaaactatctatattgttaaaacagattctacctcctattaacggtaattttagcattaaaccatattaaaaaattgtt |
216 |
Q |
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| T |
26484314 |
tgtctatttgatttcattgtagaaactatctatattgttaaaacagattctacctcctattaacggttattttagcattaaaccatattaaaaaattgtt |
26484215 |
T |
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| Q |
217 |
atatgtaaaatgtttttacactatcaatcaatcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgttaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484214 |
atatgtaaaatgtttttacactatcaatcaatcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgttaac |
26484115 |
T |
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| Q |
317 |
caaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgct |
416 |
Q |
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| T |
26484114 |
caaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgct |
26484015 |
T |
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| Q |
417 |
cgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcgtcacaattttctctatttttcaactttg |
516 |
Q |
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| T |
26484014 |
cgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcatcacaattttctctatttttcaactttg |
26483915 |
T |
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| Q |
517 |
tattcttatttcccttt |
533 |
Q |
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| T |
26483914 |
tattcttatttcccttt |
26483898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 364 - 435
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
364 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
435 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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