View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5786_high_7 (Length: 542)
Name: NF5786_high_7
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_high_7 |
 | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0087 (5 HSPs) |
| | |
|
| [»] scaffold0209 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 318 - 535
Target Start/End: Original strand, 5165273 - 5165491
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||||| |||| ||| ||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
5165273 |
ttgaatttcgtcaattgatccattataggttttgattccaccattcggtaaaagtagagttgttgtttcggacattgtctatgtgccaaggacttggtca |
5165372 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
5165373 |
tgtacaatgaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgaaaccttatccccaagacaaagaatgatagcactgac |
5165472 |
T |
|
| Q |
517 |
cgctttatcattcatctca |
535 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5165473 |
cgctttatcattcatctca |
5165491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 25942420 - 25942203
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25942420 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
25942321 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25942320 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25942221 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25942220 |
cgctttatcattcatctc |
25942203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 17694281 - 17694498
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||| ||| |||| ||||||||||||||||||| ||||||||| || ||||||| | |
|
|
| T |
17694281 |
ttgaactccgtcagttgctccattataggttttgactccaccattcgataaaagtagagttgttgtttcagacattttctatgtgccaaagacttggtta |
17694380 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
17694381 |
tgtataattaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
17694480 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17694481 |
cgctttatcattcatctc |
17694498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 5163682 - 5163565
Alignment:
| Q |
16 |
attttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
5163682 |
attttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgaccaatgttgttgggaatgaatcctgtgagaatattccctaaaa |
5163583 |
T |
|
| Q |
116 |
ggtttaaaccaactaata |
133 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5163582 |
ggtttaaaccaactaata |
5163565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 13879490 - 13879273
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
13879490 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
13879391 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
13879390 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
13879291 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13879290 |
cgccttatcattcatctc |
13879273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 381 - 534
Target Start/End: Original strand, 22351348 - 22351501
Alignment:
| Q |
381 |
gtttcagacattgtctatgtgctaagcacttggtcatgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcga |
480 |
Q |
| |
|
||||| ||||||| |||||||| || | ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| | |
|
|
| T |
22351348 |
gtttccgacattgactatgtgccaaagatttggtcatgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaa |
22351447 |
T |
|
| Q |
481 |
caccttatcctcaagacaaagaatgatagcactgaacgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
22351448 |
caccttatccccaagacatagaatgatagcactgatcgctttatcattcatctc |
22351501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 5883974 - 5883851
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| | || ||||||| |||||||||||||||| |
|
|
| T |
5883974 |
tacccgaaagatggtttcttgacaagtcaagtgattctaacattttcatatgaccaatgttgttgggaatcattcctgtgagattattccctgaaaggtt |
5883875 |
T |
|
| Q |
120 |
taaaccaactaataccacaagttt |
143 |
Q |
| |
|
||||||||||||| | |||||||| |
|
|
| T |
5883874 |
taaaccaactaatgcaacaagttt |
5883851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 5889231 - 5889358
Alignment:
| Q |
16 |
attttacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaa |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||| ||| ||||||| |
|
|
| T |
5889231 |
attttacccgaaagatggtttcttgacaagtcgagtgattccaacatttccatatgaccaatgtttttgggaattaatcctgtgagatgatttcctgaaa |
5889330 |
T |
|
| Q |
116 |
ggtttaaaccaactaataccacaagttt |
143 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |
|
|
| T |
5889331 |
ggttcaaatcaactaataccacaagttt |
5889358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 5853813 - 5853709
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||| |||||||| |||| ||||||| |||||| ||||||||| |
|
|
| T |
5853813 |
taccagaaagatggtttcttgacaaatcgagcgattctaacattttcatatgaccaatgttattgggaattaatcctgtgagattattccttgaaaggtt |
5853714 |
T |
|
| Q |
120 |
taaac |
124 |
Q |
| |
|
||||| |
|
|
| T |
5853713 |
taaac |
5853709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 5761980 - 5761857
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||| | ||||| |||| ||||||| |||||| ||||||||| |
|
|
| T |
5761980 |
tacctgaaagatggtttattgacaagtcgagtgattgtaaacttttcatatgaccaatgttgctaggaataaatcctgtgagattattccatgaaaggtt |
5761881 |
T |
|
| Q |
120 |
taaaccaactaataccacaagttt |
143 |
Q |
| |
|
|||| || ||||| |||| ||||| |
|
|
| T |
5761880 |
taaagcagctaatgccacgagttt |
5761857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 5830872 - 5830769
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||| | ||||||| || ||||||| |||||| ||||||||| |
|
|
| T |
5830872 |
taccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgaccaatgttgctaggaatgattcctgtgagattattccttgaaaggtt |
5830773 |
T |
|
| Q |
120 |
taaa |
123 |
Q |
| |
|
|||| |
|
|
| T |
5830772 |
taaa |
5830769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 5881250 - 5881135
Alignment:
| Q |
28 |
agatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaa |
127 |
Q |
| |
|
||||| |||||||||||||| | |||||| |||||||||||||||| |||||| |||||||| |||| ||||||| ||| |||||||||| |||||||| |
|
|
| T |
5881250 |
agatgatttcttgacaagtccaatgattctaacattttcatatgaccaatgtttttgggaattaatcctgtgagatgatttcctgaaaggtctaaaccaa |
5881151 |
T |
|
| Q |
128 |
ctaataccacaagttt |
143 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
5881150 |
ctaatgccacgagttt |
5881135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 5821532 - 5821423
Alignment:
| Q |
28 |
agatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaaccaa |
127 |
Q |
| |
|
||||| |||||||||||||| | |||||| || ||| |||||||| ||||||| | |||||||||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
5821532 |
agatgatttcttgacaagtccaatgattctaaactttccatatgaccaatgttgctaggaatgaatcctgtgagattattccttgaaaggtttaaaccaa |
5821433 |
T |
|
| Q |
128 |
ctaataccac |
137 |
Q |
| |
|
|||||||||| |
|
|
| T |
5821432 |
ctaataccac |
5821423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 2715493 - 2715531
Alignment:
| Q |
43 |
aagtcgagtgattccaacattttcatatgacaaatgttg |
81 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2715493 |
aagtcgagcgattctaacattttcatatgacaaatgttg |
2715531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 318 - 533
Target Start/End: Original strand, 47882318 - 47882534
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || ||| |||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47882318 |
ttgaactccgtctgttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgctaaggacttggtca |
47882417 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
47882418 |
tgtacaatgaatcaagtttatttcacatagacacaacagtagtctcccttgctacctctctcaacaccttatccccaagacacaaaatgatagcactgac |
47882517 |
T |
|
| Q |
517 |
cgctttatcattcatct |
533 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47882518 |
cgctttatcattcatct |
47882534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 22625409 - 22625626
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
22625409 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
22625508 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
22625509 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctatcaacaccttatccccaagacacagaatgatagcgctgac |
22625608 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22625609 |
cgctttatcattcatctc |
22625626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 10612207 - 10612424
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| || | ||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
10612207 |
ttgaactccgtcagttgctccattataggttttgactccaccatttgataaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
10612306 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| | ||| ||||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
10612307 |
tgtataatgaatcaagtttattccacatagacacaacaatagtctcccttgatacttttctcaacaccttatccccaaaacacagaatgatagcgctgac |
10612406 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10612407 |
cgctttatcattcatctc |
10612424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 10897756 - 10897539
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||| |||||| |||||||| |||| |||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
10897756 |
ttgaactccgtcagttgctcgattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgcctatgggccaaagacttggtca |
10897657 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
10897656 |
tgtataatgaatcaagtttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
10897557 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10897556 |
cgctttatcattcatctc |
10897539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 29913385 - 29913602
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
29913385 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
29913484 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| || | |
|
|
| T |
29913485 |
tgtataatgaatcaagtttattcctcatagacacagcagtagactcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctaac |
29913584 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
29913585 |
cgccttatcattcatctc |
29913602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 318 - 530
Target Start/End: Complemental strand, 54189261 - 54189048
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
54189261 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
54189162 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||| ||||||| ||| || ||| ||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
54189161 |
tgtataatgaatcaagtttattccacatagacacagcagtagtttcccttgatacttctctcaacaccttatccccaagacacataatgatagcgctgac |
54189062 |
T |
|
| Q |
517 |
cgctttatcattca |
530 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
54189061 |
cgccttatcattca |
54189048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 330 - 534
Target Start/End: Complemental strand, 16458205 - 16458000
Alignment:
| Q |
330 |
agttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataaat |
428 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || ||||| |||| ||||||||||||||||| ||||||||||| || ||||||||||||| ||| ||| |
|
|
| T |
16458205 |
agttgctccattataggttttgactccaccatttggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtcatgtataatgaat |
16458106 |
T |
|
| Q |
429 |
caagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcatt |
528 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
16458105 |
caagcttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgccttatcatt |
16458006 |
T |
|
| Q |
529 |
catctc |
534 |
Q |
| |
|
|||||| |
|
|
| T |
16458005 |
catctc |
16458000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 6304062 - 6303845
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
6304062 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
6303963 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
6303962 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgttgac |
6303863 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
6303862 |
cgccttatcattcatctc |
6303845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 10205121 - 10205338
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | |||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
10205121 |
ttgaactccgtcagttgctccattataggttttgactccaccatacggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
10205220 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| | | |||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
10205221 |
tgtataatgaatcaagcttattccacatagacacagcagtagcccctcttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
10205320 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10205321 |
cgccttatcattcatctc |
10205338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 10098225 - 10098442
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||||| |||||| | |||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
10098225 |
ttgaactccgtcaattgctccattataggttttgactccaccatacggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
10098324 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| | |||||| ||| || ||| ||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
10098325 |
tgtataatgaatcaagcttattccacatagacacagcagtagccccccttgatacttctctcaacaccttatccccaagacacaaaatgatagcgctgac |
10098424 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
10098425 |
cgccttatcattcatctc |
10098442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 33033391 - 33033175
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| |||| || |||||| |||||||| |||| |||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
33033391 |
ttgaactccgtcagttgctccattataagtttcgactccaccattcggtaaaagta-agttgttgcttcagacattgtctatgtgccaaggacttggtca |
33033293 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
33033292 |
tgtacaatgaatcaagtttattccacatagacacagtagtagtctcccttgctacctctctcaacaccttatccccaagacacagaatgatagcactgac |
33033193 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33033192 |
cgctttatcattcatctc |
33033175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 327 - 534
Target Start/End: Complemental strand, 21034610 - 21034402
Alignment:
| Q |
327 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
425 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| |||| |||||||||||||| |||||||||||||| || ||||||||||||| ||| |
|
|
| T |
21034610 |
gtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagtcattgtctatgtgccaaagacttggtcatgtataatg |
21034511 |
T |
|
| Q |
426 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||||||||| |||| || | |||||||||||||| ||||||||| |
|
|
| T |
21034510 |
aatcaagtttattccacatagacacagcagtagtctcccttgatacttctcttaacaccttatccccaagccacaaaatgatagcactgaccgctttatc |
21034411 |
T |
|
| Q |
526 |
attcatctc |
534 |
Q |
| |
|
||||||||| |
|
|
| T |
21034410 |
attcatctc |
21034402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 328 - 534
Target Start/End: Complemental strand, 28891505 - 28891298
Alignment:
| Q |
328 |
tcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataa |
426 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| ||| | |
|
|
| T |
28891505 |
tcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtcatgtataatga |
28891406 |
T |
|
| Q |
427 |
atcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatca |
526 |
Q |
| |
|
|||||| |||||||||||||||||| || ||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||| |||||| |
|
|
| T |
28891405 |
atcaagcttattccacatagacacagcattagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgccttatca |
28891306 |
T |
|
| Q |
527 |
ttcatctc |
534 |
Q |
| |
|
|||||||| |
|
|
| T |
28891305 |
ttcatctc |
28891298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 16756690 - 16756907
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
16756690 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
16756789 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
16756790 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
16756889 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
16756890 |
cgccttatcattcatctc |
16756907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 28328659 - 28328442
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
28328659 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcaggcactgtctatgtgccaaagacttggtca |
28328560 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
28328559 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
28328460 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
28328459 |
cgccttatcattcatctc |
28328442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 318 - 531
Target Start/End: Complemental strand, 15945409 - 15945189
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgatt---ccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttgg |
413 |
Q |
| |
|
||||| || ||||||| |||||||||| ||||||| | ||||| ||| |||| |||| ||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
15945409 |
ttgaactccgtcagtttctccattataggttttgagtacgccaccattcagtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttgg |
15945310 |
T |
|
| Q |
414 |
tcatgtacaataaatcaagtttattccacatagacac---aacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagc |
510 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||| | |||||||||||||| |||||| | | || ||||||| ||||||| | |||||| || |
|
|
| T |
15945309 |
tcatgtacgatgaatcatgtttattccacatagacacagtagtagtagtctcccttgatacctctcccaactccttatctccaagacacaaaatgatggc |
15945210 |
T |
|
| Q |
511 |
actgaacgctttatcattcat |
531 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
15945209 |
actgaccactttatcattcat |
15945189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 417
Target Start/End: Original strand, 4819669 - 4819769
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||| ||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
4819669 |
ttgaactccgtcatttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
4819768 |
T |
|
| Q |
417 |
t |
417 |
Q |
| |
|
| |
|
|
| T |
4819769 |
t |
4819769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 32211224 - 32211293
Alignment:
| Q |
180 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
249 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
32211224 |
tgagcaatattgacaggaaacatgaatacctctagctttgatcgaaaagaataagtgatatcaagagaaa |
32211293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 44016095 - 44016312
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
44016095 |
ttgaactccgtcagttgctccattataggttttgactccactattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
44016194 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||| ||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
44016195 |
tgtacaatgaatcaagtttattccacatagacacaacaatagtttcccttgctacctctctcaacaccttatcccaaagacatagaatgatagaactgac |
44016294 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
44016295 |
cgctttatcattcatctc |
44016312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 25352103 - 25351886
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25352103 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
25352004 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25352003 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25351904 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25351903 |
cgctttatcattcatctc |
25351886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 7070546 - 7070329
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
7070546 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacattgcctatgtgccaaagacttggtca |
7070447 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
7070446 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
7070347 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
7070346 |
cgccttatcattcatctc |
7070329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 25406165 - 25405948
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
25406165 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
25406066 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25406065 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25405966 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
25405965 |
cgccttatcattcatctc |
25405948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 3324217 - 3324434
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
3324217 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
3324316 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| ||||||| ||| || ||| ||||||| ||| ||||||| ||||||||||| |||| |
|
|
| T |
3324317 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctccctttatacttctctcaacaccttgtccccaagacacagaatgatagcgctgac |
3324416 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
3324417 |
cgccttatcattcatctc |
3324434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 20054190 - 20054407
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
20054190 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
20054289 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
20054290 |
tgtataatgaatcaagtttattccacatagacacaacagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
20054389 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20054390 |
cgctttatcattcatctc |
20054407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 22716663 - 22716880
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
22716663 |
ttgaactccgtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtca |
22716762 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
22716763 |
tgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
22716862 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22716863 |
cgctttatcattcatctc |
22716880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 318 - 535
Target Start/End: Original strand, 28456933 - 28457151
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || ||||||| ||||||||| ||||||| |||||| |||||||| |||| | |||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
28456933 |
ttgaactccgtcagttattccattataggttttgactccaccattcggtaaaagtagaattgttgtttcagacattgtctatgtgacaaggacttggtca |
28457032 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||| | || |||||| ||| ||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
28457033 |
tgtacaatgaatcaagtttattccacatagaaacaacagtagtctctcatgttacctctctcaacaccttatccccaagacacagaatgatggcactgat |
28457132 |
T |
|
| Q |
517 |
cgctttatcattcatctca |
535 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28457133 |
cgctttatcattcatctca |
28457151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 2736956 - 2736739
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| ||||||||||||||| |||| |||||||| || ||||||||| |
|
|
| T |
2736956 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcagaaattgcctatgtgccaaagacttggtca |
2736857 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || || ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
2736856 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctttcaacaccttatccccaagacacagaatgatagcgctgac |
2736757 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
2736756 |
cgccttatcattcatctc |
2736739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 39680797 - 39680580
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| | || ||| |||| |||||||||||||| || ||||||||||| || ||||||||| |
|
|
| T |
39680797 |
ttgaactccgtcagttgctccattataggttttgactccaccatacgataaaagtagagttgttgtttcaggcactgtctatgtgccaaagacttggtca |
39680698 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| |||||| |||||||| ||| || ||| ||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
39680697 |
tgtataatgaatcaagcttattccacatagacacagcagtagcctcccttgatacttctctcaacaccttatccctaagacacagaatgatagcgctgac |
39680598 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
39680597 |
tgccttatcattcatctc |
39680580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 490
Target Start/End: Original strand, 10941948 - 10942113
Alignment:
| Q |
326 |
tgtcagttgctccattatatgttttgattccaccttcg-gtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaat |
424 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || |||| |||| |||||||||||||||||||||||| |||| || |||| ||||| |||||| |
|
|
| T |
10941948 |
tgtcagttgctccattatatattttgactccaccatccagtaaaagtagagttgttgtttcagacattgtctacgtgccaaagactttgtcatatacaat |
10942047 |
T |
|
| Q |
425 |
aaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcc |
490 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10942048 |
gaatctagtttattccatatagacacatcagtagtctcccttgctacctttctcaacaccttatcc |
10942113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 490
Target Start/End: Original strand, 10947817 - 10947982
Alignment:
| Q |
326 |
tgtcagttgctccattatatgttttgattccaccttcg-gtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaat |
424 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| || |||| |||| |||||||||||||||||||||||| |||| || |||| ||||| |||||| |
|
|
| T |
10947817 |
tgtcagttgctccattatatattttgactccaccatccagtaaaagtagagttgttgtttcagacattgtctacgtgccaaagactttgtcatatacaat |
10947916 |
T |
|
| Q |
425 |
aaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcc |
490 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
10947917 |
gaatctagtttattccatatagacacatcagtagtctcccttgctacctttctcaacaccttatcc |
10947982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 22985861 - 22985792
Alignment:
| Q |
180 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
249 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
22985861 |
tgagcaatattgataggaaacatgaatacctctagctttgatcgaaaagaataagtgatatcaagagaaa |
22985792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 37781103 - 37781172
Alignment:
| Q |
180 |
tgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaagagaaa |
249 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || || | |||||||||||| |||||||||||||| |
|
|
| T |
37781103 |
tgagcaatattgacaggaaacatgaatacctctaactttgatcgaaaagaataagtgatatcaagagaaa |
37781172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 327 - 534
Target Start/End: Complemental strand, 4559050 - 4558842
Alignment:
| Q |
327 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
425 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
4559050 |
gtcagttgctccattataggttttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtaccaagtacttggtcatgtacaatg |
4558951 |
T |
|
| Q |
426 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||| ||||||| |||||||||||||| | | ||||||| |
|
|
| T |
4558950 |
aatcaagtttattccacatagacacaacaatagtctcccttcctacctctctccacaccttatccccaagacacagaatgatagcactaacctctttatc |
4558851 |
T |
|
| Q |
526 |
attcatctc |
534 |
Q |
| |
|
||||||||| |
|
|
| T |
4558850 |
attcatctc |
4558842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 330 - 534
Target Start/End: Complemental strand, 15313057 - 15312852
Alignment:
| Q |
330 |
agttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataaat |
428 |
Q |
| |
|
||||||||||||||| ||||||| |||| | |||| ||| |||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
15313057 |
agttgctccattataggttttgactccatcattcgataaaagtagagttgttgtttcagacattgtctatgtgccaaagacttggtcatgtataataaat |
15312958 |
T |
|
| Q |
429 |
caagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcatt |
528 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||| |||||| ||||||| ||||||||||| |||| |||||||||||| |
|
|
| T |
15312957 |
caagtttattccacatagacacagcagtagtctcccttgatacttctctcaacatcttatctccaagacacagaatgatagcgctgaccgctttatcatt |
15312858 |
T |
|
| Q |
529 |
catctc |
534 |
Q |
| |
|
|||||| |
|
|
| T |
15312857 |
catctc |
15312852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 328 - 535
Target Start/End: Complemental strand, 16633231 - 16633023
Alignment:
| Q |
328 |
tcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaataa |
426 |
Q |
| |
|
|||||| ||||||| | ||||||| |||||| ||||||| |||| ||||||||||||| ||||||| ||||||| ||| ||||||||||||||||| | |
|
|
| T |
16633231 |
tcagttactccattgtgggttttgactccaccattcggtataagtagagttgttgtttcaaacattgtgtatgtgccaaggacttggtcatgtacaatga |
16633132 |
T |
|
| Q |
427 |
atcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatca |
526 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||||||||| |||| ||| ||||||||||| ||| ||| |||||||| ||||||| ||||| |||| |
|
|
| T |
16633131 |
atcaattttatttcacatagacacatcagtagtctcccttgctgcctctctcaacaccttatccccaatacacagaatgatggcactgaccgcttcatca |
16633032 |
T |
|
| Q |
527 |
ttcatctca |
535 |
Q |
| |
|
||||||||| |
|
|
| T |
16633031 |
ttcatctca |
16633023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 245
Target Start/End: Original strand, 26633303 - 26633389
Alignment:
| Q |
159 |
cacttatttcaacatttgttatgagcaatattgacagaaaacatgaacgtgtctagctctggttgaaaagaataagagatatcaaga |
245 |
Q |
| |
|
||||||||||||| | |||||| |||||||||| ||||||||| || |||| ||||| | |||||||||||| |||||||||| |
|
|
| T |
26633303 |
cacttatttcaaccccttttatgaagaatattgacaagaaacatgaatgtctctaactctgatcgaaaagaataagtgatatcaaga |
26633389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 17076 - 16859
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
17076 |
ttgaactccgtcagttgctccattataggttttgattccaccattcggtaaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtca |
16977 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| ||||||||||||||| ||| || ||| ||||||| ||| ||||||| ||||||||||||||| |
|
|
| T |
16976 |
tgtataatgaatcaagcttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttgtccccaagacacagaatgatagcactggc |
16877 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16876 |
cgctttatcattcatctc |
16859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 327 - 534
Target Start/End: Complemental strand, 9522467 - 9522259
Alignment:
| Q |
327 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtcatgtacaata |
425 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||| ||| |||| ||||||||||||||||| ||||||||||| || ||||||||||||| ||| |
|
|
| T |
9522467 |
gtcagttgctccattataggttttgactccaccattcgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttggtcatgtataatg |
9522368 |
T |
|
| Q |
426 |
aatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
9522367 |
aatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgctttatc |
9522268 |
T |
|
| Q |
526 |
attcatctc |
534 |
Q |
| |
|
||||||||| |
|
|
| T |
9522267 |
attcatctc |
9522259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 318 - 534
Target Start/End: Original strand, 2400654 - 2400871
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
2400654 |
ttgaactctgtcagttgctccattatagattttgactccaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgccaaagacttagtca |
2400753 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| || ||| |||||||||||| ||||||||||||||||| ||||||| ||| || ||| ||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
2400754 |
tgtattatgaattaagtttattccatatagacacaacagtagtttcccttgatacttctctcaacaccttatccccaagacacagaatgatatcactgac |
2400853 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
2400854 |
cgctttatcattcatctc |
2400871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 318 - 535
Target Start/End: Complemental strand, 14997786 - 14997570
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||| || ||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
14997786 |
ttgaactccgtcagttgctccattataggttttgactccaccatttggtaaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
14997687 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||| | |||||| ||||| | |
|
|
| T |
14997686 |
tgtacaa--aatcaagtctattccacatagacacaacagtagtctcccttgctacctatctcaataccttatccccaagacacataatgatggcactaac |
14997589 |
T |
|
| Q |
517 |
cgctttatcattcatctca |
535 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
14997588 |
cacgttatcattcatctca |
14997570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 318 - 535
Target Start/End: Original strand, 31781890 - 31782109
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgtttt-gattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtc |
415 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| || || ||| |||||||| |||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31781890 |
ttgaattccgtcagttgcttcattattggtttttgactcgaccattcggtaaaagtagagttgttgtttcagacattgtctatgtgtccaggacttggtc |
31781989 |
T |
|
| Q |
416 |
atgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactga |
515 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||| |||| ||| ||||||| |
|
|
| T |
31781990 |
atgtacaatgaatcaagtttattccacatagacacaacaatagtctcccttgctacctctctcaacaccttatccccaagacacagaacgatggcactga |
31782089 |
T |
|
| Q |
516 |
acgctttatcattcatctca |
535 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31782090 |
tcgctttatcattcatctca |
31782109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 318 - 535
Target Start/End: Complemental strand, 10628110 - 10627892
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||| |||||| |||||| | |||| ||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
10628110 |
ttgaactccgtcagttgctccattatcggttttgactccaccattcggttaaagtagagttgttgtttcagacattgtctatgtgccaaggacttggtca |
10628011 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | ||| ||||| ||||||| |||||||| ||||||| |
|
|
| T |
10628010 |
tgcacaatgaatcaagtttattccacatagacacaacaatagtctcccttgctaactctctctataccgtatccccaagacacagaatgatggcactgac |
10627911 |
T |
|
| Q |
517 |
cgctttatcattcatctca |
535 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10627910 |
agctttatcattcatctca |
10627892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 318 - 534
Target Start/End: Complemental strand, 25446238 - 25446021
Alignment:
| Q |
318 |
ttgaattctgtcagttgctccattatatgttttgattccacctt-cggtaatagtatagttgttgtttcagacattgtctatgtgctaagcacttggtca |
416 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| |||||||| || ||| |||| ||||||||||||||||| ||||||||||| || ||||| ||| |
|
|
| T |
25446238 |
ttgaactccgtcagttgctccattataggttttgactccacctttcgataaaagtagagttgttgtttcagacactgtctatgtgccaaagacttgatca |
25446139 |
T |
|
| Q |
417 |
tgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaa |
516 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| | |||||| |||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
25446138 |
tgtataatgaatcaagtttattccacatagacatagcagtagcctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgac |
25446039 |
T |
|
| Q |
517 |
cgctttatcattcatctc |
534 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
25446038 |
cgccttatcattcatctc |
25446021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 388 - 531
Target Start/End: Complemental strand, 28787079 - 28786936
Alignment:
| Q |
388 |
acattgtctatgtgctaagcacttggtcatgtacaataaatcaagtttattccacatagacacaacagtagtctcccttgctacctcactcgacacctta |
487 |
Q |
| |
|
||||||||||||||| || |||||| |||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| || ||| |||||||| |
|
|
| T |
28787079 |
acattgtctatgtgccaaagacttggccatgtataatgaatcaagtttattccacatagacacagcagtagtctcccttgatacttctctcaacacctta |
28786980 |
T |
|
| Q |
488 |
tcctcaagacaaagaatgatagcactgaacgctttatcattcat |
531 |
Q |
| |
|
||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
28786979 |
tccccaagacacagaatgatagcactgaccgctttatcattcat |
28786936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 28788464 - 28788402
Alignment:
| Q |
327 |
gtcagttgctccattatatgttttgattccacc-ttcggtaatagtatagttgttgtttcaga |
388 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||| ||| ||||| |||||||||||||| |
|
|
| T |
28788464 |
gtcagttgctccattataggttttgactccaccgttcgataaaagtatggttgttgtttcaga |
28788402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 40980 - 40862
Alignment:
| Q |
25 |
gaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtttaaac |
124 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||| |||||||| ||||||||||||||| |||| ||||||| |||||| |||||||||||||| |
|
|
| T |
40980 |
gaaagatggtttcttgacaagtcaagtgattctaatgtttccatatgaccaatgttgttgggaattaatcctgtgagattattccttgaaaggtttaaac |
40881 |
T |
|
| Q |
125 |
caactaataccacaagttt |
143 |
Q |
| |
|
|| ||||| |||||||||| |
|
|
| T |
40880 |
cagctaatgccacaagttt |
40862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 20604 - 20481
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||| |||| ||| |||||||| ||||| |||||||| ||| ||| |||||||| ||||||| | |||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
20604 |
taccagaaatatgatttcttgagaagtcaagtgattctaacctttccatatgaccaatgttgctaggaatgaatcctgtgagattattccatgaaaggtt |
20505 |
T |
|
| Q |
120 |
taaaccaactaataccacaagttt |
143 |
Q |
| |
|
||||||| ||||| |||| ||||| |
|
|
| T |
20504 |
taaaccagctaatgccacgagttt |
20481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 30952 - 30829
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||||| || ||| |||||||| ||||||| | |||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
30952 |
tacctgaaatatgttttcttgataagtctagtgattctaatctttccatatgaccaatgttgctaggaatgaatcctgtgagattattccatgaaaggtt |
30853 |
T |
|
| Q |
120 |
taaaccaactaataccacaagttt |
143 |
Q |
| |
|
||||||| ||||| |||| ||||| |
|
|
| T |
30852 |
taaaccagctaatgccacgagttt |
30829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 34944 - 34841
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||| | ||||||| || ||||||| |||||| ||||||||| |
|
|
| T |
34944 |
taccagaaagatggtttcttgacaagtcgagtgattctaacctttccatatgaccaattttgctaggaatgattcctgtgagattattccttgaaaggtt |
34845 |
T |
|
| Q |
120 |
taaa |
123 |
Q |
| |
|
|||| |
|
|
| T |
34844 |
taaa |
34841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 13546 - 13423
Alignment:
| Q |
20 |
tacctgaaagatggtttcttgacaagtcgagtgattccaacattttcatatgacaaatgttgttgggaatgaatcttgtgagaatattccctgaaaggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||| | ||||| |||| | ||||| |||||| ||||||||| |
|
|
| T |
13546 |
tacctgaaagatggtttcttgacaagtcgagtgattgtaaactttccatatgaccaatgttgctaggaataaatcctttgagattattccatgaaaggtt |
13447 |
T |
|
| Q |
120 |
taaaccaactaataccacaagttt |
143 |
Q |
| |
|
||| || ||||| |||| ||||| |
|
|
| T |
13446 |
gaaagcagctaatgccacgagttt |
13423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 534
Target Start/End: Original strand, 16601 - 16682
Alignment:
| Q |
453 |
cagtagtctcccttgctacctcactcgacaccttatcctcaagacaaagaatgatagcactgaacgctttatcattcatctc |
534 |
Q |
| |
|
||||||||||||||| ||| || ||| ||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
16601 |
cagtagtctcccttgatacttctctcaacaccttatccccaagacacagaatgatagcgctgaccgctttatcattcatctc |
16682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University