View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5786_low_1 (Length: 665)

Name: NF5786_low_1
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5786_low_1
NF5786_low_1
[»] chr2 (1 HSPs)
chr2 (13-649)||(40718840-40719475)


Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 13 - 649
Target Start/End: Original strand, 40718840 - 40719475
Alignment:
Q  13 aatatttcagaccaaacttaaccaattgttccaagggacacaaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattg 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40718840 aatatttcagaccaaacttaaccaattgttccaagggacactaaaaagtttgaaaatgcatatatttgaacctatggcgccgaacaaataaattaaattg 40718939  T
Q  113 gcgggttttctcaaaaatgaaaataaattggcgggtgcgtgggtgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatggcat 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40718940 gcgggttttctcaaaaatgaaaataaattggcgggtgcgtggttgatatgttccatctgtttcttgtaaaaataatttatatatttgaaaacaatagcat 40719039  T
Q  213 aatttacatatnnnnnnnttgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgctttccatttgac 312  Q
    |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40719040 aatttacatataaaaaaattgcatgatgcaattttattgtattttcataatggttttcagtgtgtaatatggaggcaagttgcattgctt-ccatttgac 40719138  T
Q  313 caataccaagttggtttcaatgtgtaattacttacgaagtgagaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtactta 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719139 caataccaagttggtttcaatgtgtaattacttacgaagtgaaaatttcttgcaaataacttaattatcatacatttaaaaagacttgtcaatgtactta 40719238  T
Q  413 tgtattttatctgtaagattttcctcaaccgtagttattgagttattagtagtacaaagcataattgaaatgaaaaaaccaaattattgtgacacctcaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719239 tgtattttatctgtaagattttcctcaaccgtagttattgagttattagtagtacaaagcataattgaaatgaaaaaaccaaattattgtgacacctcaa 40719338  T
Q  513 acatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttcaactgcatccgaacattctatggccagcagttg 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40719339 acatattggcacaaatttcaaagcaaataattgccatcttccaaggtttccatgtacttctaagttcaactgcatccgaacattctatggccagcagttg 40719438  T
Q  613 aatcctcacattgaacactatccaccctaactaaaac 649  Q
    |||||||||||||||||||||||||||||||||||||    
T  40719439 aatcctcacattgaacactatccaccctaactaaaac 40719475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University