View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5786_low_10 (Length: 475)
Name: NF5786_low_10
Description: NF5786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5786_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 37146893 - 37147131
Alignment:
| Q |
11 |
cacagaacgaaaccaagaaccaaacgccctacaacgcagcaagcagaacactcttctgagtccaacaatctcaatcaaacataaagaatgaacaagatat |
110 |
Q |
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| T |
37146893 |
cacagaacgaaaccaagaaccaaacgccctacaacgcagcaagcagaacactcttctgagtccaacaatctcaatcaaacataaa-aatgaacaagatat |
37146991 |
T |
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| Q |
111 |
cacaagttacagcgggaccggtgcggcgtcgacaaaacaaactttgaaacttgatgtgcttaacaactctaaaaaggaataatagaatcacaagtcagaa |
210 |
Q |
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| T |
37146992 |
cacaagttacagcgg-accggtgcggcgtcgacaaaacaaactttgaaacttgatgtgcttaacaactctaaaaaggaataagagaatcacaagtcagaa |
37147090 |
T |
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| Q |
211 |
acattgaccacaaatgagaaacccaactcgtaactactcaa |
251 |
Q |
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| T |
37147091 |
acattgaccacgaatgagaaacccaactcgtaactactcaa |
37147131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 254 - 457
Target Start/End: Original strand, 37147161 - 37147364
Alignment:
| Q |
254 |
atgtaacattcaccggatcctggagctttaaccatcaaagaacctatccagttcttaacaaaaatcctgannnnnnnnnnnactaccttaaaaccaacag |
353 |
Q |
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| T |
37147161 |
atgtaacattcaccggatcctggagctttaaccatcaaagaacctattcagttcttaacaaaaatcctgatttttttttttactaccttaaaaccaacag |
37147260 |
T |
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| Q |
354 |
atttgtcgccggttaaaacccaccattgaaagacatgtgaacgacaaagtccagcttcagccgtcaagaagttggggatgatcaacatttatcaaccacc |
453 |
Q |
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| T |
37147261 |
atttgtcgccggttaaaacccaccattgaaagacatgtgaacgacaaagtccagcttcagccgtcaagaagttggggatgatcaacatttatcaaccacc |
37147360 |
T |
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| Q |
454 |
aact |
457 |
Q |
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| T |
37147361 |
aact |
37147364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 31961 - 32040
Alignment:
| Q |
142 |
acaaaacaaactttgaaacttgatgtgcttaacaactctaaaaaggaataatagaatcacaagtcagaaacattgaccac |
221 |
Q |
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| T |
31961 |
acaaaacaaactatgaaactagcaatgctcaacaactctaaaaaggaatcaaagaatcaaaagtcaaacacatcgaccac |
32040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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